U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1105100 histone H2B [ Plasmodium falciparum 3D7 ]

    Gene ID: 810614, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1105100
    Gene description
    histone H2B
    Locus tag
    PF3D7_1105100
    See related
    PlasmoDB:PF3D7_1105100; VEuPathDB:PF3D7_1105100
    Gene type
    protein coding
    RNA name
    histone H2B
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1105100 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Sequence:
    Chromosome: 11; NC_037282.1 (226065..226418)

    Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase, putative Neighboring gene histone H4 Neighboring gene WD repeat-containing protein WRAP73, putative Neighboring gene conserved Plasmodium protein, unknown function

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037282.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum. Petter M, et al. Mol Microbiol, 2013 Mar. PMID 23373537
    2. H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome. Hoeijmakers WA, et al. Mol Microbiol, 2013 Mar. PMID 23320541, Free PMC Article
    3. Functional Characterization of the m(6)A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Sinha A, et al. mBio, 2021 Apr 27. PMID 33906926, Free PMC Article
    4. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    5. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. H2A.Z/H2B.Z double-variant nucleosome demarcates putative regulatory regions of the P. falciparum epigenome.
      Title: H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome.
    2. Thus, Plasmodium falciparum H2A.Z/Pf H2B.Z double-variant nucleosomes appear to have a highly specific function in the regulation of virulence.
      Title: H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone H2B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037282.1 Reference assembly

      Range
      226065..226418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347702.1 → XP_001347738.1  histone H2B [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347738.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V615, A0A024VFR9, A0A024WNL9, A0A024X6V1, A0A0L7KA58, A0A2I0C061, Q27717, Q8IIV1, W4IGW2
      Conserved Domains (1) summary
      PTZ00463
      Location:1 → 117
      PTZ00463; histone H2B; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.