U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1417200 NOT family protein, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 811751, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1417200
    Gene description
    NOT family protein, putative
    Locus tag
    PF3D7_1417200
    See related
    PlasmoDB:PF3D7_1417200; VEuPathDB:PF3D7_1417200
    Gene type
    protein coding
    RNA name
    NOT family protein, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1417200 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    2
    Sequence:
    Chromosome: 14; NC_037283.1 (694585..708177)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene inner membrane complex protein 1l Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene cysteine protease ATG4, putative Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Plasmodium NOT1-G paralogue is an essential regulator of sexual stage maturation and parasite transmission. Hart KJ, et al. PLoS Biol, 2021 Oct. PMID 34673764, Free PMC Article
    2. The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum. Bunnik EM, et al. Genome Biol, 2016 Jul 5. PMID 27381095, Free PMC Article
    3. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    4. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    5. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    NOT family protein, putative

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      694585..708177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348307.1 → XP_001348343.1  NOT family protein, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348343.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0C3C4, Q8ILS4, W7JM84
      Conserved Domains (3) summary
      pfam04054
      Location:3988 → 4455
      Not1; CCR4-Not complex component, Not1
      pfam12842
      Location:2178 → 2323
      DUF3819; Domain of unknown function (DUF3819)
      pfam16415
      Location:1399 → 1564
      CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials