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    PF3D7_0311100 pre-mRNA splicing factor, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 814426, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0311100
    Gene description
    pre-mRNA splicing factor, putative
    Locus tag
    PF3D7_0311100
    See related
    PlasmoDB:PF3D7_0311100; VEuPathDB:PF3D7_0311100
    Gene type
    protein coding
    RNA name
    pre-mRNA splicing factor, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0311100 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_000521.4 (470860..473161, complement)

    Chromosome 3 - NC_000521.4Genomic Context describing neighboring genes Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene valine--tRNA ligase, putative Neighboring gene phosphatidylinositol 3- and 4-kinase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000521.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. Bowman S, et al. Nature, 1999 Aug 5. PMID 10448855
    2. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    3. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    4. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    pre-mRNA splicing factor, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000521.4 Reference assembly

      Range
      470860..473161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351148.1 → XP_001351184.1  pre-mRNA splicing factor, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351184.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0L7KA94, A0A2I0BTM2, O77355
      Conserved Domains (2) summary
      TIGR01642
      Location:315 → 418
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam01480
      Location:47 → 112
      PWI; PWI domain
    Nucleotide Protein
    Heading Accession and Version

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