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    PF3D7_0403700 pre-mRNA-splicing factor CLF1, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 812468, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0403700
    Gene description
    pre-mRNA-splicing factor CLF1, putative
    Locus tag
    PF3D7_0403700
    See related
    PlasmoDB:PF3D7_0403700; VEuPathDB:PF3D7_0403700
    Gene type
    protein coding
    RNA name
    pre-mRNA-splicing factor CLF1, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0403700 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_004318.2 (206228..209394, complement)

    Chromosome 4 - NC_004318.2Genomic Context describing neighboring genes Neighboring gene ubiquitin specific protease, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene alpha/beta hydrolase, putative Neighboring gene SET domain protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004318.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication initiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cis assembly of pre-catalytic spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of Prp19 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of U2-type prespliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor CLF1, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004318.2 Reference assembly

      Range
      206228..209394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351313.1 → XP_001351349.1  pre-mRNA-splicing factor CLF1, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351349.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0BZG7, Q8I1Z2, W7FDD0
      Conserved Domains (5) summary
      smart00386
      Location:85 → 116
      HAT; HAT (Half-A-TPR) repeats
      TIGR02917
      Location:414 → 563
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:73 → 99
      TPR; TPR repeat [structural motif]
      NF000535
      Location:732 → 780
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      pfam05843
      Location:153 → 237
      Suf; Suppressor of forked protein (Suf)
    Nucleotide Protein
    Heading Accession and Version

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