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    PF3D7_1230700 protein transport protein SEC13 [ Plasmodium falciparum 3D7 ]

    Gene ID: 811348, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1230700
    Gene description
    protein transport protein SEC13
    Locus tag
    PF3D7_1230700
    See related
    PlasmoDB:PF3D7_1230700; VEuPathDB:PF3D7_1230700
    Gene type
    protein coding
    RNA name
    protein transport protein SEC13
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1230700 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Sequence:
    Chromosome: 12; NC_037284.1 (1259620..1262088)

    Chromosome 12 - NC_037284.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein, putative Neighboring gene sun-family protein, putative Neighboring gene pre-mRNA-splicing regulator, putative Neighboring gene serine/threonine protein kinase RIO1, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037284.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PfSec13 is an unusual chromatin-associated nucleoporin of Plasmodium falciparum that is essential for parasite proliferation in human erythrocytes. Dahan-Pasternak N, et al. J Cell Sci, 2013 Jul 15. PMID 23687383
    2. Spatial dissection of the cis- and trans-Golgi compartments in the malaria parasite Plasmodium falciparum. Struck NS, et al. Mol Microbiol, 2008 Mar. PMID 18284574
    3. A network-based approach reveals novel invasion and Maurer's clefts-related proteins in Plasmodium falciparum. Das D, et al. Mol Omics, 2019 Dec 2. PMID 31631203
    4. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    5. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Component Evidence Code Pubs
    located_in Maurer's cleft RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein SEC13

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037284.1 Reference assembly

      Range
      1259620..1262088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001350666.1 → XP_001350702.1  protein transport protein SEC13 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001350702.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0L7M058, A0A2I0BZ79, Q8I5B3
      Conserved Domains (4) summary
      PHA03378
      Location:482 → 602
      PHA03378; EBNA-3B; Provisional
      sd00039
      Location:61 → 102
      7WD40; WD40 repeat [structural motif]
      pfam03154
      Location:483 → 785
      Atrophin-1; Atrophin-1 family
      cl29593
      Location:11 → 315
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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