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    CG10479 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38674, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG10479provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035656
    Locus tag
    Dmel_CG10479
    See related
    AllianceGenome:FB:FBgn0035656
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG10479
    Summary
    Is expressed in several structures, including anlage in statu nascendi; gland; head epidermis primordium; mesoderm; and visceral mesoderm derivative. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG10479 in Genome Data Viewer
    Location:
    65A1-65A2; 3-16 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (5967545..5976007, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (5960645..5969107, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Regulator of chromosome condensation 1 Neighboring gene EGFR adaptor protein Neighboring gene long non-coding RNA:CR45439 Neighboring gene long non-coding RNA:CR45440

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Computational identification and experimental characterization of preferred downstream positions in human core promoters. Dreos R, et al. PLoS Comput Biol, 2021 Aug. PMID 34383743, Free PMC Article
    2. Three key subregions contribute to the function of the downstream RNA polymerase II core promoter. Theisen JW, et al. Mol Cell Biol, 2010 Jul. PMID 20457814, Free PMC Article
    3. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Thomas S, et al. Genome Biol, 2011. PMID 21569360, Free PMC Article
    4. The MTE, a new core promoter element for transcription by RNA polymerase II. Lim CY, et al. Genes Dev, 2004 Jul 1. PMID 15231738, Free PMC Article
    5. Target genes of Dpp/BMP signaling pathway revealed by transcriptome profiling in the early D.melanogaster embryo. Dominguez C, et al. Gene, 2016 Oct 10. PMID 27397649

    See all (38) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG10479-PA
    CG10479-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      5967545..5976007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139749.3 → NP_648006.1  uncharacterized protein Dmel_CG10479, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648006.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRR9
      Related
      FBpp0076778
      Conserved Domains (1) summary
      cd00173
      Location:248 → 325
      SH2; Src homology 2 (SH2) domain

    2. NM_001274529.1 → NP_001261458.1  uncharacterized protein Dmel_CG10479, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261458.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PEA4
      Conserved Domains (1) summary
      cd00173
      Location:249 → 326
      SH2; Src homology 2 (SH2) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PEA4 M9PEA4
    Q9VRR9 Q9VRR9

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