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    Ccp84Ae Ccp84Ae [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40821, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccp84Aeprovided by FlyBase
    Official Full Name
    Ccp84Aeprovided by FlyBase
    Primary source
    FLYBASE:FBgn0004779
    Locus tag
    Dmel_CG1330
    See related
    AllianceGenome:FB:FBgn0004779
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS00004.5; cc4; Ccp; CG1330; DmelCcp84Ae; Dmel\CG1330
    Summary
    Predicted to be a structural constituent of chitin-based larval cuticle. Predicted to be involved in chitin-based cuticle development. Predicted to be located in chitin-based extracellular matrix. Predicted to be active in extracellular matrix. Is expressed in adult head and adult heart. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Ccp84Ae in Genome Data Viewer
    Location:
    84A3-84A3; 3-48 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6690887..6691758, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2516609..2517480, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ccp84Ag Neighboring gene Ccp84Af Neighboring gene Ccp84Ad Neighboring gene Ccp84Ac

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila. Casillas S, et al. BMC Evol Biol, 2006 Dec 12. PMID 17163987, Free PMC Article
    2. Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex. Negre B, et al. Genome Res, 2005 May. PMID 15867430, Free PMC Article
    3. Extensive gene amplification and concerted evolution within the CPR family of cuticular proteins in mosquitoes. Cornman RS, et al. Insect Biochem Mol Biol, 2008 Jun. PMID 18510978, Free PMC Article
    4. Molecular and genetic organization of the antennapedia gene complex of Drosophila melanogaster. Kaufman TC, et al. Adv Genet, 1990. PMID 1971986
    5. HOM-C evolution in Drosophila: is there a need for Hox gene clustering? Negre B, et al. Trends Genet, 2007 Feb. PMID 17188778

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables structural constituent of chitin-based larval cuticle ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chitin-based cuticle development ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chitin-based extracellular matrix ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Ccp84Ae
    Names
    CG1330-PA
    Ccp84Ae-PA
    cuticle cluster 4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      6690887..6691758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141422.3 → NP_649679.1  Ccp84Ae [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649679.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O97062
      Related
      FBpp0081192
      Conserved Domains (1) summary
      pfam00379
      Location:51 → 103
      Chitin_bind_4; Insect cuticle protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O97062 O97062

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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