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    CG6040 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42292, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG6040provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038679
    Locus tag
    Dmel_CG6040
    See related
    AllianceGenome:FB:FBgn0038679
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6040
    Summary
    Is expressed in several structures, including embryonic hypopharynx; embryonic large intestine; embryonic ventral epidermis; epidermis; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG6040 in Genome Data Viewer
    Location:
    91F1-91F2; 3-66 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (19096961..19131929)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (14922683..14957651)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L55 Neighboring gene ATP synthase, subunit D Neighboring gene Cytochrome P450 12a5 Neighboring gene Cytochrome P450 12a4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The developmental proteome of Drosophila melanogaster. Casas-Vila N, et al. Genome Res, 2017 Jul. PMID 28381612, Free PMC Article
    2. Cyp12a4 confers lufenuron resistance in a natural population of Drosophila melanogaster. Bogwitz MR, et al. Proc Natl Acad Sci U S A, 2005 Sep 6. PMID 16120680, Free PMC Article
    3. Genetic architecture of natural variation in visual senescence in Drosophila. Carbone MA, et al. Proc Natl Acad Sci U S A, 2016 Oct 25. PMID 27791033, Free PMC Article
    4. Direct response to Notch activation: signaling crosstalk and incoherent logic. Krejcí A, et al. Sci Signal, 2009 Jan 27. PMID 19176515
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    mobile_element

    • Loc: 19106876-19106905 mobile_element_type = transposon:1360{}5688
    • Loc: 19114044-19114157 mobile_element_type = transposon:INE-1{}5653

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG6040-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      19096961..19131929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142524.4 → NP_650781.2  uncharacterized protein Dmel_CG6040 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650781.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NP25, Q9VE02
      Related
      FBpp0083143
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95SC5 Q95SC5
    Q9VE02 Q9VE02

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