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    CG9213 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32490, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG9213provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030655
    Locus tag
    Dmel_CG9213
    See related
    AllianceGenome:FB:FBgn0030655
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG32585; Dmel\CG9213
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Is expressed in organism. Orthologous to human CWF19L2 (CWF19 like cell cycle control factor 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG9213 in Genome Data Viewer
    Location:
    13D3-13D3; 1-50 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (15572076..15574535, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (15466109..15468568, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Nascent-associated complex beta-subunit-like, testis 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    2. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of post-mRNA release spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG9213-PA
    CG9213-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      15572076..15574535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_176737.3 → NP_788910.1  uncharacterized protein Dmel_CG9213, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788910.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q95RI4, Q9VXT5
      UniProtKB/TrEMBL
      X2JKF2
      Related
      FBpp0073887
      Conserved Domains (2) summary
      pfam04676
      Location:593 → 685
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:460 → 584
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1

    2. NM_001298348.1 → NP_001285277.1  uncharacterized protein Dmel_CG9213, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285277.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q95RI4, Q9VXT5
      UniProtKB/TrEMBL
      X2JKF2
      Conserved Domains (2) summary
      pfam04676
      Location:593 → 685
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:460 → 584
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VXT5.2 Q9VXT5
    X2JKF2 X2JKF2

    Gene LinkOut

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