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    CG6340 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32482, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG6340provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030648
    Locus tag
    Dmel_CG6340
    See related
    AllianceGenome:FB:FBgn0030648
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6340
    Summary
    Located in nucleoplasm. Is expressed in several structures, including adult brain cell body rind; central brain primordium; embryonic/larval midgut; embryonic/larval midgut primordium; and ganglia. Orthologous to human RSRC2 (arginine and serine rich coiled-coil 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG6340 in Genome Data Viewer
    Location:
    13C5-13C5; 1-50 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (15482374..15486612)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (15376407..15380645)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene ALG14, UDP-N-acetylglucosaminyltransferase subunit Neighboring gene maternal haploid Neighboring gene uncharacterized protein Neighboring gene Golgi microtubule-associated protein Neighboring gene long non-coding RNA:CR44888 Neighboring gene mir-283 stem loop

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GAL4 enhancer trap patterns during Drosophila development. Ward EJ, et al. Genesis, 2002 Sep-Oct. PMID 12324946
    2. Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome. Maisonhaute C, et al. Gene, 2007 May 15. PMID 17382490
    3. Reduction in mutation frequency by very low-dose gamma irradiation of Drosophila melanogaster germ cells. Ogura K, et al. Radiat Res, 2009 Jan. PMID 19138046
    4. Mutation of the Apc1 homologue shattered disrupts normal eye development by disrupting G1 cell cycle arrest and progression through mitosis. Tanaka-Matakatsu M, et al. Dev Biol, 2007 Sep 15. PMID 17689521, Free PMC Article
    5. A high throughput, functional screen of human Body Mass Index GWAS loci using tissue-specific RNAi Drosophila melanogaster crosses. Baranski TJ, et al. PLoS Genet, 2018 Apr. PMID 29608557, Free PMC Article

    See all (41) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in nucleoplasm HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG6340-PA
    CG6340-PB
    CG6340-PE
    CG6340-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      15482374..15486612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001272645.2 → NP_001259574.1  uncharacterized protein Dmel_CG6340, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259574.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PJN6

    2. NM_167447.3 → NP_727861.1  uncharacterized protein Dmel_CG6340, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727861.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IR33
      Related
      FBpp0301762

    3. NM_132806.4 → NP_573034.1  uncharacterized protein Dmel_CG6340, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573034.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MQL9, Q9VXU3
      Related
      FBpp0073856
      Conserved Domains (1) summary
      pfam15477
      Location:403 → 505
      SMAP; Small acidic protein family

    4. NM_167448.2 → NP_727862.1  uncharacterized protein Dmel_CG6340, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727862.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VXU4
      Related
      FBpp0073857
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PJN6 M9PJN6
    Q8IR33 Q8IR33
    Q8MQL9 Q8MQL9
    Q9VXU3 Q9VXU3
    Q9VXU4 Q9VXU4

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