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    frm farmer [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38624, updated on 9-Dec-2024

    Summary

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    Official Symbol
    frmprovided by FlyBase
    Official Full Name
    farmerprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035612
    Locus tag
    Dmel_CG10625
    See related
    AllianceGenome:FB:FBgn0035612
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.236; CG10625; Dmel\CG10625
    Summary
    Predicted to be active in extracellular space. Is expressed in embryonic dorsal epidermis; embryonic head epidermis; and embryonic ventral epidermis. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See frm in Genome Data Viewer
    Location:
    64D3-64D3; 3-14 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (5538411..5551159, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (5531511..5544259, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Leucokinin receptor Neighboring gene uncharacterized protein Neighboring gene Succinyl-coenzyme A synthetase beta subunit, GDP-forming Neighboring gene sinuous

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic G-protein-coupled receptor analysis in Drosophila melanogaster identifies a leucokinin receptor with novel roles. Radford JC, et al. J Biol Chem, 2002 Oct 11. PMID 12163486
    2. Drep-2 is a novel synaptic protein important for learning and memory. Andlauer TF, et al. Elife, 2014 Nov 13. PMID 25392983, Free PMC Article
    3. Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl. Yao L, et al. Development, 2017 Sep 1. PMID 28760809, Free PMC Article
    4. Sex-Specific Transcript Diversity in the Fly Head Is Established during Pupal Stages and Adulthood and Is Largely Independent of the Mating Process and the Germline. Mohr C, et al. Sex Dev, 2017. PMID 28273663
    5. Editor's Highlight: Genetic Targets of Acute Toluene Inhalation in Drosophila melanogaster. Bushnell PJ, et al. Toxicol Sci, 2017 Mar 1. PMID 28013218, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    farmer
    Names
    CG10625-PA
    CG10625-PB
    CG10625-PC
    CG10625-PD
    CG10625-PE
    CG10625-PG
    CG10625-PH
    CG10625-PI
    CG10625-PJ
    CG10625-PK
    frm-PA
    frm-PB
    frm-PC
    frm-PD
    frm-PE
    frm-PG
    frm-PH
    frm-PI
    frm-PJ
    frm-PK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      5538411..5551159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001144417.3 → NP_001137889.1  farmer, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137889.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0B7
      Conserved Domains (2) summary
      TIGR00855
      Location:637 → 731
      L12; ribosomal protein L7/L12
      cl22429
      Location:664 → 740
      HHH_5; Helix-hairpin-helix domain

    2. NM_001104040.2 → NP_001097510.1  farmer, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097510.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86NR7
      Conserved Domains (1) summary
      pfam00379
      Location:54 → 102
      Chitin_bind_4; Insect cuticle protein

    3. NM_139713.5 → NP_647970.1  farmer, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T018
      Related
      FBpp0076843

    4. NM_168121.4 → NP_729075.1  farmer, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729075.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRM2
      Related
      FBpp0076845
      Conserved Domains (1) summary
      pfam00379
      Location:54 → 102
      Chitin_bind_4; Insect cuticle protein

    5. NM_168119.4 → NP_729073.1  farmer, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729073.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T018
      Related
      FBpp0076844

    6. NM_001144416.3 → NP_001137888.1  farmer, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137888.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0B8
      Conserved Domains (3) summary
      TIGR00855
      Location:637 → 745
      L12; ribosomal protein L7/L12
      cl00788
      Location:632 → 714
      MttA_Hcf106; mttA/Hcf106 family
      cl22429
      Location:678 → 754
      HHH_5; Helix-hairpin-helix domain

    7. NM_001144415.3 → NP_001137887.1  farmer, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137887.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0B9
      Conserved Domains (4) summary
      TIGR00855
      Location:1051 → 1159
      L12; ribosomal protein L7/L12
      pfam00379
      Location:54 → 102
      Chitin_bind_4; Insect cuticle protein
      cl00788
      Location:1046 → 1128
      MttA_Hcf106; mttA/Hcf106 family
      cl22429
      Location:1092 → 1168
      HHH_5; Helix-hairpin-helix domain

    8. NM_168120.4 → NP_729074.1  farmer, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729074.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRM2
      Related
      FBpp0076846
      Conserved Domains (1) summary
      pfam00379
      Location:54 → 102
      Chitin_bind_4; Insect cuticle protein

    9. NM_001104042.3 → NP_001097512.1  farmer, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097512.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JNL3

    10. NM_001144418.3 → NP_001137890.1  farmer, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137890.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JNL3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8JNL3 A8JNL3
    B7Z0B7 B7Z0B7
    B7Z0B8 B7Z0B8
    B7Z0B9 B7Z0B9
    Q86NR7 Q86NR7
    Q8T018 Q8T018
    Q9VRM2 Q9VRM2

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