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    red red Malpighian tubules [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41738, updated on 17-Dec-2024

    Summary

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    Official Symbol
    redprovided by FlyBase
    Official Full Name
    red Malpighian tubulesprovided by FlyBase
    Primary source
    FLYBASE:FBgn0285913
    Locus tag
    Dmel_CG12207
    See related
    AllianceGenome:FB:FBgn0285913
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    bw-l; CG12207; Dmel\CG12207
    Summary
    Is expressed in several structures, including Malpighian tubule primordium; embryonic Malpighian tubule; embryonic/larval midgut; and embryonic/larval midgut primordium. Orthologous to human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See red in Genome Data Viewer
    Location:
    88B1-88B3; 3-55 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (14289071..14302276)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (10114793..10127998)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR46020 Neighboring gene trithorax Neighboring gene long non-coding RNA:CR45596 Neighboring gene Intraflagellar transport 54 Neighboring gene suppressor of Hairy wing Neighboring gene RNA polymerase II subunit I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Position Effects and Variegation Enhancers in an Autosomal Region of DROSOPHILA MELANOGASTER. Henikoff S. Genetics, 1979 Sep. PMID 17248959, Free PMC Article
    2. Studies of l(3)c43hs1 a polyphasic, temperature-sensitive mutant of Drosophila melanogaster with a variety of imaginal disc defects. Martin P, et al. Dev Biol, 1977 Feb. PMID 402295
    3. An Eye on Trafficking Genes: Identification of Four Eye Color Mutations in Drosophila. Grant P, et al. G3 (Bethesda), 2016 Oct 13. PMID 27558665, Free PMC Article
    4. Isolation and characterization of the Drosophila melanogaster cDNA encoding the sepiapterin reductase. Seong C, et al. Biochim Biophys Acta, 1998 Nov 26. PMID 9838142
    5. Muller "Elements" in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics. Schaeffer SW. Genetics, 2018 Sep. PMID 30166445, Free PMC Article

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    red malpighian tubules
    Names
    CG12207-PA
    CG12207-PB
    CG12207-PC
    CG12207-PD
    CG12207-PE
    CG12207-PF
    CG12207-PG
    brown-like
    red-PA
    red-PB
    red-PC
    red-PD
    red-PE
    red-PF
    red-PG

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      14289071..14302276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300396.1 → NP_001287325.1  red malpighian tubules, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287325.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1YWR5, A0A2Z1Z390, Q961C8
      Conserved Domains (2) summary
      cd00118
      Location:62 → 106
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:64 → 113
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    2. NM_142095.4 → NP_650352.1  red malpighian tubules, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650352.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1YWR5, A0A2Z1Z390, Q961C8
      Related
      FBpp0082380
      Conserved Domains (2) summary
      cd00118
      Location:62 → 106
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:64 → 113
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    3. NM_001260168.1 → NP_001247097.1  red malpighian tubules, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247097.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1YWR5, A0A2Z1Z390, Q961C8
      Conserved Domains (2) summary
      cd00118
      Location:62 → 106
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:64 → 113
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    4. NM_169572.3 → NP_731894.1  red malpighian tubules, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731894.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1YWR5, A0A2Z1Z390, Q961C8
      Related
      FBpp0082381
      Conserved Domains (2) summary
      cd00118
      Location:62 → 106
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:64 → 113
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    5. NM_169573.3 → NP_731895.1  red malpighian tubules, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731895.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
      Related
      FBpp0082382
      Conserved Domains (2) summary
      cd00118
      Location:39 → 83
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:41 → 90
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    6. NM_001260166.2 → NP_001247095.1  red malpighian tubules, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247095.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
      Conserved Domains (2) summary
      cd00118
      Location:39 → 83
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:41 → 90
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

    7. NM_001260167.1 → NP_001247096.1  red malpighian tubules, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247096.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
      Conserved Domains (2) summary
      cd00118
      Location:39 → 83
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan
      COG1388
      Location:41 → 90
      LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q961C8 Q961C8
    Q9I7J4 Q9I7J4

    Gene LinkOut

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