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    yphA putative inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947365, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yphA
    Official Full Name
    putative inner membrane protein
    Primary source
    ECOCYC:G7337
    Locus tag
    b2543
    See related
    ASAP:ABE-0008365
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2540
    Summary
    YphA and YqjF are paralogs. [More information is available at EcoGene: EG13462]. YphA is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G7337].
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    Genomic context

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    Sequence:
    NC_000913.3 (2673346..2673768)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit Neighboring gene 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit Neighboring gene putative aldose 1-epimerase YphB Neighboring gene putative zinc-binding dehydrogenase YphC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the hca cluster encoding the dioxygenolytic pathway for initial catabolism of 3-phenylpropionic acid in Escherichia coli K-12. Díaz E, et al. J Bacteriol, 1998 Jun. PMID 9603882, Free PMC Article
    2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative inner membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2673346..2673768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417038.4 putative inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417038.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2VC07
      Conserved Domains (1) summary
      COG2259
      Location:5 → 140
      DoxX; Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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