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    yhdX putative ABC transporter membrane subunit YhdX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947765, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yhdX
    Official Full Name
    putative ABC transporter membrane subunit YhdX
    Primary source
    ECOCYC:EG12835
    Locus tag
    b3269
    See related
    ASAP:ABE-0010733
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3256
    Summary
    Putative ABC transporter YhdWXYZ has an unknown substrate and yhdW' is an apparent pseudogene. [More information is available at EcoGene: EG12835]. YhdX is an ATP-binding component of a predicted amino acid ABC transporter. [More information is available at EcoCyc: EG12835].
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    Genomic context

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    Sequence:
    NC_000913.3 (3420134..3421315)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene lipoprotein YhdV Neighboring gene pseudo Neighboring gene putative ABC transporter membrane subunit YhdY Neighboring gene putative ABC transporter ATP-binding subunit YhdZ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article
    3. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptide transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ABC transporter membrane subunit YhdX

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3420134..3421315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026209.1 putative ABC transporter membrane subunit YhdX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026209.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377C6E1, A0A6M9WXS6, A0A8S7I306
      Conserved Domains (1) summary
      COG4597
      Location:1 → 393
      BatB; ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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