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    phnF putative transcriptional regulator PhnF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948617, updated on 3-Dec-2024

    Summary

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    Official Symbol
    phnF
    Official Full Name
    putative transcriptional regulator PhnF
    Primary source
    ECOCYC:EG10715
    Locus tag
    b4102
    See related
    ASAP:ABE-0013435
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4095
    Summary
    GntR family. [More information is available at EcoGene: EG10715]. PhnF is a transcriptional regulator that belongs to the GntR family (specifically, to the HutC subfamily) . [More information is available at EcoCyc: EG10715].
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    Genomic context

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    Sequence:
    NC_000913.3 (4321697..4322422, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene carbon-phosphorus lyase core complex subunit PhnJ Neighboring gene carbon-phosphorus lyase core complex subunit PhnI Neighboring gene carbon-phosphorus lyase core complex subunit PhnH Neighboring gene carbon-phosphorus lyase core complex subunit PhnG Neighboring gene pseudo Neighboring gene phosphonate/phosphate ABC transporter periplasmic binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi. Metcalf WW, et al. J Bacteriol, 1991 Jan. PMID 1846145, Free PMC Article
    2. Molecular genetic studies of a 10.9-kb operon in Escherichia coli for phosphonate uptake and biodegradation. Wanner BL, et al. FEMS Microbiol Lett, 1992 Dec 15. PMID 1335942
    3. HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold. Aravind L, et al. FEMS Microbiol Lett, 2003 May 16. PMID 12757941
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12. Makino K, et al. J Bacteriol, 1991 Apr. PMID 1840580, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in organic phosphonate transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transcriptional regulator PhnF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4321697..4322422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418526.1 putative transcriptional regulator PhnF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418526.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6T8N3, A0A8I0CFK1, A0AAP3A1T8
      Conserved Domains (1) summary
      PRK10079
      Location:1 → 241
      PRK10079; phosphonate metabolism transcriptional regulator PhnF; Provisional
    Nucleotide Protein
    Heading Accession and Version

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