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    ydcJ DUF1338 domain-containing protein YdcJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945991, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydcJ
    Official Full Name
    DUF1338 domain-containing protein YdcJ
    Primary source
    ECOCYC:G6738
    Locus tag
    b1423
    See related
    ASAP:ABE-0004750
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1417
    Summary
    AFMB Structural Genomics target Number 105 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13753].
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    Genomic context

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    Sequence:
    NC_000913.3 (1495288..1496631)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene methyl-accepting chemotaxis protein Trg Neighboring gene DNA-binding transcriptional dual regulator YdcI Neighboring gene glucans biosynthesis protein D Neighboring gene DUF465 domain-containing protein YdcH

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and catalytic diversity within the amidohydrolase superfamily. Seibert CM, et al. Biochemistry, 2005 May 3. PMID 15850372
    2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1338 domain-containing protein YdcJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1495288..1496631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415940.1 DUF1338 domain-containing protein YdcJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415940.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7HUY3, A0A8T6BKF3
      Conserved Domains (1) summary
      cd16348
      Location:8 → 313
      VOC_YdcJ_like; uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ
    Nucleotide Protein
    Heading Accession and Version

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