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    cynR DNA-binding transcriptional dual regulator CynR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945001, updated on 3-Dec-2024

    Summary

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    Official Symbol
    cynR
    Official Full Name
    DNA-binding transcriptional dual regulator CynR
    Primary source
    ECOCYC:EG11421
    Locus tag
    b0338
    See related
    ASAP:ABE-0001165
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0335
    Summary
    The CynR translation start site has been verified by start codon mutagenesis (Lamblin, 1993). [More information is available at EcoGene: EG11421].
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    Genomic context

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    Sequence:
    NC_000913.3 (357791..358690, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene propionyl-CoA synthetase Neighboring gene cytosine transporter Neighboring gene cytosine/isoguanine deaminase Neighboring gene carbonic anhydrase 1 Neighboring gene cyanase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. Muraoka S, et al. J Mol Biol, 2003 May 2. PMID 12706716
    2. The oligomerization of CynR in Escherichia coli. Knapp GS, et al. Protein Sci, 2009 Nov. PMID 19760662, Free PMC Article
    3. Expression and purification of the cynR regulatory gene product: CynR is a DNA-binding protein. Lamblin AF, et al. J Bacteriol, 1993 Dec. PMID 8253686, Free PMC Article
    4. The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family. Sung YC, et al. J Bacteriol, 1992 Jun. PMID 1592818, Free PMC Article
    5. Functional analysis of the Escherichia coli K-12 cyn operon transcriptional regulation. Lamblin AF, et al. J Bacteriol, 1994 Nov. PMID 7961413, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of protein-DNA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator CynR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      357791..358690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414872.3 DNA-binding transcriptional dual regulator CynR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414872.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N3HYV0
      Conserved Domains (1) summary
      PRK11242
      Location:1 → 294
      PRK11242; DNA-binding transcriptional regulator CynR; Provisional
    Nucleotide Protein
    Heading Accession and Version

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