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    ynfE putative selenate reductase YnfE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946135, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynfE
    Official Full Name
    putative selenate reductase YnfE
    Primary source
    ECOCYC:G6845
    Locus tag
    b1587
    See related
    ASAP:ABE-0005302
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1582
    Summary
    YnfE is highly similar to DmsA, the catalytic subunit of the dimethyl sulfoxide reductase heterotrimer, and cross-reacts with an anti-DmsA antibody. [More information is available at EcoCyc: G6845].
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    Genomic context

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    Sequence:
    NC_000913.3 (1658069..1660495)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF06788 family lipoprotein YnfC Neighboring gene DUF1161 domain-containing protein YnfD Neighboring gene putative selenate reductase YnfF Neighboring gene putative oxidoreductase YnfG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Activation and repression at the Escherichia coli ynfEFGHI operon promoter. Xu M, et al. J Bacteriol, 2009 May. PMID 19251855, Free PMC Article
    2. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
    3. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. Kang Y, et al. J Bacteriol, 2005 Feb. PMID 15659690, Free PMC Article
    4. Differential Interactions between Tat-specific redox enzyme peptides and their chaperones. Chan CS, et al. J Bacteriol, 2009 Apr. PMID 19151138, Free PMC Article
    5. Oligomeric properties and signal peptide binding by Escherichia coli Tat protein transport complexes. de Leeuw E, et al. J Mol Biol, 2002 Oct 4. PMID 12367533

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dimethyl sulfoxide reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables electron transfer activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molybdenum ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molybdenum ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molybdopterin cofactor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables selenate reductase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anaerobic respiration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative selenate reductase YnfE
    NP_416104.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1658069..1660495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416104.1 putative selenate reductase YnfE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416104.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7CEU3
      Conserved Domains (1) summary
      TIGR02166
      Location:10 → 808
      dmsA_ynfE; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
    Nucleotide Protein
    Heading Accession and Version

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