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    CG5890 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43126, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5890provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039380
    Locus tag
    Dmel_CG5890
    See related
    AllianceGenome:FB:FBgn0039380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5890
    Summary
    Predicted to enable calcium ion binding activity. Involved in wing disc dorsal/ventral pattern formation. Is expressed in adult head. Orthologous to several human genes including KCNIP1 (potassium voltage-gated channel interacting protein 1); KCNIP2 (potassium voltage-gated channel interacting protein 2); and KCNIP3 (potassium voltage-gated channel interacting protein 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5890 in Genome Data Viewer
    Location:
    96F4-96F5; 3-89 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (25856154..25872670)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (21681876..21698392)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Tetraspanin 96F Neighboring gene Signal peptide peptidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Thirteen is enough: the myosins of Dictyostelium discoideum and their light chains. Kollmar M. BMC Genomics, 2006 Jul 20. PMID 16857047, Free PMC Article
    2. A gain-of-function suppressor screen for genes involved in dorsal-ventral boundary formation in the Drosophila wing. Bejarano F, et al. Genetics, 2008 Jan. PMID 18202376, Free PMC Article
    3. Identification of genes expressed during Drosophila melanogaster gastrulation by using subtractive hybridization. González-Agüero M, et al. Gene, 2005 Jan 31. PMID 15716118
    4. Evolutionary Dynamics of Abundant Stop Codon Readthrough. Jungreis I, et al. Mol Biol Evol, 2016 Dec. PMID 27604222, Free PMC Article
    5. Identification of neural outgrowth genes using genome-wide RNAi. Sepp KJ, et al. PLoS Genet, 2008 Jul 4. PMID 18604272, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in wing disc dorsal/ventral pattern formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5890-PC
    CG5890-PD
    CG5890-PE
    Frequenin4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      25856154..25872670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300605.1 → NP_001287534.1  uncharacterized protein Dmel_CG5890, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287534.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4P1SAA7
      Conserved Domains (1) summary
      COG5126
      Location:29 → 192
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    2. NM_001370037.1 → NP_001356889.1  uncharacterized protein Dmel_CG5890, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JIY4, Q9VBL2
      Conserved Domains (1) summary
      COG5126
      Location:29 → 192
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    3. NM_001170268.2 → NP_001163739.2  uncharacterized protein Dmel_CG5890, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163739.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4P1SAA7
      Conserved Domains (1) summary
      COG5126
      Location:29 → 192
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A4P1SAA7 A0A4P1SAA7
    Q9VBL2 Q9VBL2

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