U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    babos babos [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37557, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    babosprovided by FlyBase
    Official Full Name
    babosprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034724
    Locus tag
    Dmel_CG3624
    See related
    AllianceGenome:FB:FBgn0034724
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3624; CT12183; Dmel\CG3624
    Summary
    Involved in regulation of dendrite morphogenesis. Located in perivitelline space. Is expressed in several structures, including CNS glial cell; epithelial tube; ganglia; gut section; and head epidermis primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See babos in Genome Data Viewer
    Location:
    58D4-58D4; 2-99 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22393876..22402059, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18281381..18289564, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene wrapper Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44757 Neighboring gene long non-coding RNA:CR44760 Neighboring gene uncharacterized protein Neighboring gene Ventrally-expressed protein D

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plasticity in the Drosophila larval visual system. Farca-Luna AJ, et al. Front Cell Neurosci, 2013. PMID 23847470, Free PMC Article
    2. Light-induced structural and functional plasticity in Drosophila larval visual system. Yuan Q, et al. Science, 2011 Sep 9. PMID 21903815, Free PMC Article
    3. Genome-Wide Association Analysis of Anoxia Tolerance in Drosophila melanogaster. Campbell JB, et al. G3 (Bethesda), 2019 Sep 4. PMID 31311780, Free PMC Article
    4. A screen for modifiers of RacGAP(84C) gain-of-function in the Drosophila eye revealed the LIM kinase Cdi/TESK1 as a downstream effector of Rac1 during spermatogenesis. Raymond K, et al. J Cell Sci, 2004 Jun 1. PMID 15169836
    5. Drosophila activating transcription factor-2 is involved in stress response via activation by p38, but not c-Jun NH(2)-terminal kinase. Sano Y, et al. Mol Biol Cell, 2005 Jun. PMID 15788564, Free PMC Article

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of dendrite morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perivitelline space HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    babos
    Names
    CG3624-PA
    CG3624-PB
    babos-PA
    babos-PB
    cell adhesion protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22393876..22402059 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299790.1 → NP_001286719.1  babos, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286719.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q961Q2, Q9W258
      Conserved Domains (2) summary
      smart00410
      Location:70 → 154
      IG_like; Immunoglobulin like
      pfam00047
      Location:70 → 154
      ig; Immunoglobulin domain

    2. NM_137823.3 → NP_611667.1  babos, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611667.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q961Q2, Q9W258
      Related
      FBpp0071756
      Conserved Domains (2) summary
      smart00410
      Location:70 → 154
      IG_like; Immunoglobulin like
      pfam00047
      Location:70 → 154
      ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W258 Q9W258

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools