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    arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879121, updated on 11-Sep-2024

    Summary

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    Gene symbol
    arnD
    Gene description
    4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD
    Locus tag
    PA3555
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3984006..3984893)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Neighboring gene UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase Neighboring gene undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase Neighboring gene bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase Neighboring gene 4-amino-4-deoxy-L-arabinose lipid A transferase Neighboring gene 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE Neighboring gene 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF Neighboring gene nucleotide sugar dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A formyltransferase required for polymyxin resistance in Escherichia coli and the modification of lipid A with 4-Amino-4-deoxy-L-arabinose. Identification and function oF UDP-4-deoxy-4-formamido-L-arabinose. Breazeale SD, et al. J Biol Chem, 2005 Apr 8. PMID 15695810
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within beta-L-Ara4N-lipid A biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD
    NP_252245.1
    • class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3984006..3984893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252245.1 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252245.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9HY62
      Conserved Domains (1) summary
      PRK15394
      Location:1 → 294
      PRK15394; 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HY62.1

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