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    Tcp11l2 t-complex 11 like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314683, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tcp11l2provided by RGD
    Official Full Name
    t-complex 11 like 2provided by RGD
    Primary source
    RGD:1307494
    See related
    EnsemblRapid:ENSRNOG00000007587 AllianceGenome:RGD:1307494
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307494
    Summary
    Predicted to be involved in muscle cell migration and signal transduction. Predicted to be located in cytoplasm. Orthologous to human TCP11L2 (t-complex 11 like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 327.9), Lung (RPKM 214.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tcp11l2 in Genome Data Viewer
    Location:
    7q13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (21037955..21072857, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (19150241..19185135, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (24859048..24893907, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene regulatory factor X4 Neighboring gene uncharacterized LOC134479648 Neighboring gene RNA polymerase III subunit B Neighboring gene uncharacterized LOC102552828 Neighboring gene cytoskeleton-associated protein 4 Neighboring gene uncharacterized LOC134479649

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC109402

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in muscle cell migration ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    T-complex protein 11-like protein 2
    Names
    t-complex 11, testis-specific-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017458.1 → NP_001017458.1  T-complex protein 11-like protein 2

      See identical proteins and their annotated locations for NP_001017458.1

      Status: PROVISIONAL

      Source sequence(s)
      BC092644
      UniProtKB/Swiss-Prot
      Q568Z0
      UniProtKB/TrEMBL
      A6IFF3
      Related
      ENSRNOP00000010024.4, ENSRNOT00000010024.8
      Conserved Domains (1) summary
      pfam05794
      Location:77 → 496
      Tcp11; T-complex protein 11

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      21037955..21072857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079034.2 → XP_038934962.1  T-complex protein 11-like protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q568Z0
      UniProtKB/TrEMBL
      A6IFF3
      Conserved Domains (1) summary
      pfam05794
      Location:77 → 496
      Tcp11; T-complex protein 11

    2. XM_006241174.5 → XP_006241236.1  T-complex protein 11-like protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006241236.1

      UniProtKB/Swiss-Prot
      Q568Z0
      UniProtKB/TrEMBL
      A6IFF3
      Conserved Domains (1) summary
      pfam05794
      Location:77 → 496
      Tcp11; T-complex protein 11
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q568Z0.1 GenPept UniProtKB/Swiss-Prot:Q568Z0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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