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    CG17162 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 5740457, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG17162provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039944
    Locus tag
    Dmel_CG17162
    See related
    AllianceGenome:FB:FBgn0039944
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-20Ea; CG40460; Dmel\CG17162; FBgn0058460
    Summary
    Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG17162 in Genome Data Viewer
    Location:
    20F4-20F4; 1-66 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (23084960..23096735, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) XHet NW_001848859.1 (63778..75553, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR43480 Neighboring gene suppressor of forked Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila. Dong Y, et al. Genetics, 2020 May. PMID 32179582, Free PMC Article
    2. The Wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in Drosophila melanogaster. Fear JM, et al. BMC Syst Biol, 2015 Sep 4. PMID 26335107, Free PMC Article
    3. Molecular characterization of embryonic gonads by gene expression profiling in Drosophila melanogaster. Shigenobu S, et al. Proc Natl Acad Sci U S A, 2006 Sep 12. PMID 16950879, Free PMC Article
    4. An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination. Kanca O, et al. Elife, 2022 Jun 20. PMID 35723254, Free PMC Article
    5. Comprehensive Identification and Alternative Splicing of Microexons in Drosophila. Pang TL, et al. Front Genet, 2021. PMID 33859668, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG17162-PB
    CG17162-PC
    CG17162-PD
    CG17162-PE
    CG17162-PF
    CG17162-PG
    CG17162-PH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      23084960..23096735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300719.1 → NP_001287648.1  uncharacterized protein Dmel_CG17162, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287648.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    2. NM_001144067.1 → NP_001137539.1  uncharacterized protein Dmel_CG17162, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    3. NM_001111001.3 → NP_001104471.1  uncharacterized protein Dmel_CG17162, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104471.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    4. NM_001111002.3 → NP_001104472.1  uncharacterized protein Dmel_CG17162, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104472.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    5. NM_001111003.3 → NP_001104473.1  uncharacterized protein Dmel_CG17162, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104473.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    6. NM_001300718.1 → NP_001287647.1  uncharacterized protein Dmel_CG17162, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287647.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A021WW64

    7. NM_001111000.2 → NP_001104470.1  uncharacterized protein Dmel_CG17162, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104470.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A021WW64 A0A021WW64
    Q8SYH8 Q8SYH8

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