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    Obp47a Odorant-binding protein 47a [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36162, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Obp47aprovided by FlyBase
    Official Full Name
    Odorant-binding protein 47aprovided by FlyBase
    Primary source
    FLYBASE:FBgn0033573
    Locus tag
    Dmel_CG12944
    See related
    AllianceGenome:FB:FBgn0033573
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    47a; CG12944; DmelObp47a; Dmel\CG12944
    Summary
    Predicted to enable odorant binding activity. Predicted to be involved in sensory perception of smell. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Obp47a in Genome Data Viewer
    Location:
    47C6-47C6; 2-63 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (10909923..10910485)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (6797428..6797990)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, I and III subunit E Neighboring gene polyphemus Neighboring gene Serpin 47C Neighboring gene long non-coding RNA:CR45228

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An analysis of genetic changes during the divergence of Drosophila species. Sousa-Neves R, et al. PLoS One, 2010 May 5. PMID 20463966, Free PMC Article
    2. A large family of divergent Drosophila odorant-binding proteins expressed in gustatory and olfactory sensilla. Galindo K, et al. Genetics, 2001 Nov. PMID 11729153, Free PMC Article
    3. The odorant-binding proteins of Drosophila melanogaster: annotation and characterization of a divergent gene family. Graham LA, et al. Gene, 2002 Jun 12. PMID 12119098
    4. The 40-Year Mystery of Insect Odorant-Binding Proteins. Rihani K, et al. Biomolecules, 2021 Mar 30. PMID 33808208, Free PMC Article
    5. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Librado P, et al. Genome Biol Evol, 2013. PMID 24148943, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Odorant-binding protein 47a
    Names
    CG12944-PA
    CG12944-PB
    Obp47a-PA
    Obp47a-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      10909923..10910485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136788.1 → NP_610632.1  Odorant-binding protein 47a, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610632.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8E3, D8FT18
      Related
      FBpp0087295, FBtr0088199
      Conserved Domains (1) summary
      pfam01395
      Location:48 → 132
      PBP_GOBP; PBP/GOBP family

    2. NM_206088.1 → NP_995810.1  Odorant-binding protein 47a, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_995810.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8E4, D8FT18
      Conserved Domains (1) summary
      pfam01395
      Location:43 → 127
      PBP_GOBP; PBP/GOBP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8E3 A1Z8E3
    A1Z8E4 A1Z8E4

    Gene LinkOut

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