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    Sqstm1 sequestosome 1 [ Mus musculus (house mouse) ]

    Gene ID: 18412, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sqstm1provided by MGI
    Official Full Name
    sequestosome 1provided by MGI
    Primary source
    MGI:MGI:107931
    See related
    Ensembl:ENSMUSG00000015837 AllianceGenome:MGI:107931
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Osi; p62; A170; STAP; OSF-6; STONE14
    Summary
    Enables several functions, including ionotropic glutamate receptor binding activity; modification-dependent protein binding activity; and molecular condensate scaffold activity. Involved in several processes, including aggrephagy; brown fat cell proliferation; and positive regulation of long-term synaptic potentiation. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in several cellular components, including aggresome; sperm midpiece; and vacuole. Is active in intracellular non-membrane-bounded organelle. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Used to study Paget's disease of bone. Human ortholog(s) of this gene implicated in Paget's disease of bone; Paget's disease of bone 3; distal myopathy with rimmed vacuoles; frontotemporal dementia and/or amyotrophic lateral sclerosis 3; and neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset. Orthologous to human SQSTM1 (sequestosome 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 275.7), placenta adult (RPKM 170.1) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Sqstm1 in Genome Data Viewer
    Location:
    11 B1.3; 11 30.36 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50090979..50105303, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50200152..50210820, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 9B Neighboring gene predicted gene, 53700 Neighboring gene STARR-positive B cell enhancer ABC_E1823 Neighboring gene MRN complex interacting protein Neighboring gene STARR-positive B cell enhancer ABC_E6977 Neighboring gene STARR-seq mESC enhancer starr_29389 Neighboring gene STARR-seq mESC enhancer starr_29391 Neighboring gene predicted gene, 36556 Neighboring gene mannoside acetylglucosaminyltransferase 4, isoenzyme B Neighboring gene microRNA 6919

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Items 1 - 25 of 36
    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding  
    enables K63-linked polyubiquitin modification-dependent protein binding PubMed 
    enables K63-linked polyubiquitin modification-dependent protein binding  
    enables SH2 domain binding  
    enables SH2 domain binding  
    enables enzyme binding  
    enables identical protein binding PubMed 
    enables identical protein binding  
    enables ionotropic glutamate receptor binding PubMed 
    enables molecular condensate scaffold activity PubMed 
    enables molecular condensate scaffold activity  
    enables molecular sequestering activity  
    enables protein binding PubMed 
    enables protein kinase C binding  
    enables protein kinase C binding  
    enables protein kinase C binding  
    enables protein kinase binding  
    enables protein sequestering activity  
    enables protein sequestering activity  
    enables protein-containing complex binding  
    enables protein-containing complex binding  
    enables protein-macromolecule adaptor activity PubMed 
    enables protein-macromolecule adaptor activity  
    enables signaling adaptor activity  
    enables signaling adaptor activity  
    enables signaling receptor activity  
    enables signaling receptor activity  
    enables transcription coregulator activity PubMed 
    enables ubiquitin binding  
    enables ubiquitin binding  
    enables ubiquitin protein ligase binding  
    enables ubiquitin protein ligase binding  
    enables ubiquitin-modified protein reader activity PubMed 
    enables ubiquitin-modified protein reader activity  
    enables ubiquitin-modified protein reader activity  
    enables zinc ion binding  
    Items 1 - 25 of 36
    Items 1 - 25 of 53
    Process Evidence Code Pubs
    involved_in aggrephagy  
    involved_in aggrephagy PubMed 
    involved_in aggrephagy  
    involved_in apoptotic process  
    involved_in autophagy PubMed 
    involved_in autophagy  
    involved_in autophagy  
    involved_in brown fat cell proliferation PubMed 
    involved_in cell differentiation  
    involved_in endosome organization  
    involved_in endosome organization  
    involved_in endosome organization  
    involved_in energy homeostasis PubMed 
    involved_in immune system process  
    involved_in macroautophagy  
    involved_in membraneless organelle assembly PubMed 
    involved_in membraneless organelle assembly  
    involved_in mitophagy  
    involved_in mitophagy  
    involved_in mitophagy  
    involved_in negative regulation of ferroptosis  
    involved_in negative regulation of ferroptosis  
    involved_in negative regulation of protein ubiquitination PubMed 
    involved_in negative regulation of protein ubiquitination  
    involved_in negative regulation of protein ubiquitination  
    involved_in negative regulation of toll-like receptor 4 signaling pathway  
    involved_in negative regulation of toll-like receptor 4 signaling pathway  
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II PubMed 
    involved_in pexophagy  
    involved_in pexophagy  
    involved_in positive regulation of autophagy  
    involved_in positive regulation of autophagy  
    involved_in positive regulation of long-term synaptic potentiation PubMed 
    involved_in positive regulation of protein localization to plasma membrane PubMed 
    involved_in positive regulation of protein phosphorylation  
    involved_in protein catabolic process  
    involved_in protein catabolic process  
    involved_in protein import into nucleus PubMed 
    involved_in protein import into nucleus PubMed 
    involved_in protein localization to perinuclear region of cytoplasm  
    involved_in protein localization to perinuclear region of cytoplasm  
    involved_in protein phosphorylation PubMed 
    involved_in protein targeting to vacuole involved in autophagy  
    involved_in protein targeting to vacuole involved in autophagy  
    involved_in regulation of canonical NF-kappaB signal transduction  
    involved_in regulation of canonical NF-kappaB signal transduction  
    involved_in regulation of protein complex stability  
    involved_in regulation of protein complex stability  
    involved_in response to ischemia  
    involved_in response to mitochondrial depolarisation  
    involved_in response to mitochondrial depolarisation  
    involved_in temperature homeostasis PubMed 
    acts_upstream_of transcription by RNA polymerase II PubMed 
    Items 1 - 25 of 53
    Items 1 - 20 of 33
    Component Evidence Code Pubs
    located_in Lewy body  
    located_in Lewy body  
    located_in P-body  
    located_in P-body  
    located_in PML body  
    located_in PML body  
    is_active_in aggresome  
    located_in aggresome PubMed 
    is_active_in amphisome  
    located_in amphisome  
    located_in amphisome  
    located_in autolysosome PubMed 
    located_in autolysosome  
    located_in autophagosome PubMed 
    is_active_in autophagosome  
    located_in autophagosome PubMed 
    located_in autophagosome  
    located_in cytoplasm  
    located_in cytosol  
    is_active_in cytosol  
    located_in cytosol  
    located_in endoplasmic reticulum  
    located_in glutamatergic synapse  
    located_in inclusion body  
    located_in intracellular membrane-bounded organelle  
    is_active_in intracellular membraneless organelle PubMed 
    is_active_in intracellular membraneless organelle  
    is_active_in intracellular membraneless organelle  
    located_in late endosome  
    located_in mitochondrion PubMed 
    located_in phagophore assembly site PubMed 
    located_in sarcomere  
    located_in sperm midpiece PubMed 
    Items 1 - 20 of 33

    General protein information

    Preferred Names
    sequestosome-1
    Names
    oxidative stress induced
    ubiquitin-binding protein p62

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290769.1NP_001277698.1  sequestosome-1 isoform 2

      See identical proteins and their annotated locations for NP_001277698.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region but maintains reading frame, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
      Source sequence(s)
      AK028898, BY267273
      Consensus CDS
      CCDS70176.1
      UniProtKB/Swiss-Prot
      Q64337
      Related
      ENSMUSP00000015981.6, ENSMUST00000015981.12
      Conserved Domains (3) summary
      cd06402
      Location:5102
      PB1_p62; The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      cd02340
      Location:126166
      ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
      cl21463
      Location:353403
      UBA_like_SF; UBA domain-like superfamily
    2. NM_011018.3NP_035148.1  sequestosome-1 isoform 1

      See identical proteins and their annotated locations for NP_035148.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK028898, BY267273, CX240486
      Consensus CDS
      CCDS24629.1
      UniProtKB/Swiss-Prot
      Q64337, Q99JM8
      Related
      ENSMUSP00000099835.5, ENSMUST00000102774.11
      Conserved Domains (3) summary
      cd06402
      Location:5102
      PB1_p62; The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      cd02340
      Location:126166
      ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
      pfam16577
      Location:381442
      UBA_5; UBA domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      50090979..50105303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156414.1XP_036012307.1  sequestosome-1 isoform X1

      Conserved Domains (3) summary
      cd06402
      Location:5102
      PB1_p62; The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      cd02340
      Location:126166
      ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
      pfam16577
      Location:354415
      UBA_5; UBA domain
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