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    PDE4DIPP2 PDE4DIP pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 100996724, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PDE4DIPP2provided by HGNC
    Official Full Name
    PDE4DIP pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:55081
    See related
    AllianceGenome:HGNC:55081
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MMGL; CMYA2; PDE4DIP; Myomegalin
    Expression
    Biased expression in heart (RPKM 64.2), brain (RPKM 13.8) and 12 other tissues See more
    Orthologs
    all
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    Genomic context

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    See PDE4DIPP2 in Genome Data Viewer
    Location:
    1p11.2
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120469628..120665436, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120482927..120678656, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_003871056.3 (541202..737010, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144582720-144583220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144583221-144583722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144592931-144593854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144593855-144594776 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603371-144603926 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603927-144604483 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144604484-144605039 Neighboring gene NBPF member 8 Neighboring gene profilin 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1601 Neighboring gene uncharacterized LOC107985524 Neighboring gene uncharacterized LOC124904641 Neighboring gene uncharacterized LOC124904392 Neighboring gene uncharacterized LOC105378944 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1249 Neighboring gene notch 2 N-terminal like R Neighboring gene NBPF member 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Other Names

    • Cardiomyopathy-associated protein 2
    • Phosphodiesterase 4D-interacting protein
    • myomegalin-like
    • phosphodiesterase 4D interacting protein-like

    Clone Names

    • FLJ10757, FLJ11523, FLJ21253, DKFZp781J054, DKFZp313A0931

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144516.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC241952, AC247039, BM992506

    2. NR_144517.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC241952, AC247039, BM992506

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      120469628..120665436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791753.1 Reference GRCh38.p14 PATCHES

      Range
      80614..275929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      120482927..120678656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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