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    Gm33989 predicted gene, 33989 [ Mus musculus (house mouse) ]

    Gene ID: 102637087, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm33989provided by MGI
    Official Full Name
    predicted gene, 33989provided by MGI
    Primary source
    MGI:MGI:5593148
    See related
    Ensembl:ENSMUSG00000108621 AllianceGenome:MGI:5593148
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm4790; Gm37494; 6230415J03Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 2.5), limb E14.5 (RPKM 2.5) and 27 other tissues See more
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    Genomic context

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    See Gm33989 in Genome Data Viewer
    Location:
    7 B3; 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (39189384..39230014)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (39544430..39580590)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 939 Neighboring gene predicted gene, 51478 Neighboring gene predicted gene 28455 Neighboring gene STARR-seq mESC enhancer starr_18699 Neighboring gene STARR-positive B cell enhancer ABC_E9109 Neighboring gene zinc finger protein 619 Neighboring gene STARR-positive B cell enhancer ABC_E6538 Neighboring gene STARR-seq mESC enhancer starr_18702 Neighboring gene STARR-seq mESC enhancer starr_18703 Neighboring gene ribosomal protein S8 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2H pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Long non-coding RNA Gm37494 alleviates osteoarthritis chondrocyte injury via the microRNA-181a-5p/GABRA1 axis. Yuan A, et al. J Orthop Surg Res, 2022 Jun 10. PMID 35689264, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long non-coding RNA Gm37494 alleviates osteoarthritis chondrocyte injury via the microRNA-181a-5p/GABRA1 axis.
      Title: Long non-coding RNA Gm37494 alleviates osteoarthritis chondrocyte injury via the microRNA-181a-5p/GABRA1 axis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC102637087

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378666.1 → NP_001365595.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_001378667.1 → NP_001365596.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. NM_001378668.1 → NP_001365597.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. NM_001378669.1 → NP_001365598.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. NM_001378670.1 → NP_001365599.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. NM_001378671.1 → NP_001365600.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    7. NM_001378672.1 → NP_001365601.1  uncharacterized protein LOC102637087 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. NM_001378673.1 → NP_001365602.1  uncharacterized protein LOC102637087 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC113955
      Related
      ENSMUST00000188038.5
      Conserved Domains (3) summary
      COG5048
      Location:469 → 906
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:804 → 824
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:39 → 79
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      39189384..39230014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036152550.1 → XP_036008443.1  uncharacterized protein LOC102637087 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_036152549.1 → XP_036008442.1  uncharacterized protein LOC102637087 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:402 → 839
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:737 → 757
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_036152547.1 → XP_036008440.1  uncharacterized protein LOC102637087 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:484 → 921
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:819 → 839
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:54 → 94
      KRAB; KRAB box

    4. XM_036152548.1 → XP_036008441.1  uncharacterized protein LOC102637087 isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:434 → 871
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:769 → 789
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
    Nucleotide Protein Strain
    Heading Accession and Version

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