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    9030624G23Rik RIKEN cDNA 9030624G23 gene [ Mus musculus (house mouse) ]

    Gene ID: 66808, updated on 9-Dec-2024

    Summary

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    Official Symbol
    9030624G23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9030624G23 geneprovided by MGI
    Primary source
    MGI:MGI:1914058
    See related
    Ensembl:ENSMUSG00000073158 AllianceGenome:MGI:1914058
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in branchial arch; genitourinary system; limb; maxillary process; and trunk somite. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 1.9), whole brain E14.5 (RPKM 1.7) and 27 other tissues See more
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    Genomic context

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    See 9030624G23Rik in Genome Data Viewer
    Location:
    12 A1.3; 12 8.46 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (24093529..24147257, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (24043528..24097256, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 17330 Neighboring gene predicted gene 5954 Neighboring gene STARR-seq mESC enhancer starr_31749 Neighboring gene STARR-seq mESC enhancer starr_31750 Neighboring gene predicted gene, 47446 Neighboring gene predicted gene, 21297

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC66808

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256489.2 → NP_001243418.1  uncharacterized protein LOC66808 isoform 2

      See identical proteins and their annotated locations for NP_001243418.1

      Status: VALIDATED

      Source sequence(s)
      AC150661
      Consensus CDS
      CCDS56833.1
      UniProtKB/TrEMBL
      Q9D308
      Related
      ENSMUSP00000099077.4, ENSMUST00000101538.5
      Conserved Domains (2) summary
      smart00349
      Location:45 → 86
      KRAB; krueppel associated box
      pfam01352
      Location:45 → 82
      KRAB; KRAB box

    2. NM_001382819.1 → NP_001369748.1  uncharacterized protein LOC66808 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC150661
      Conserved Domains (4) summary
      COG5048
      Location:198 → 571
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:174 → 194
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:45 → 85
      KRAB; KRAB box
      pfam13465
      Location:158 → 182
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      24093529..24147257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157580.1 → XP_036013473.1  uncharacterized protein LOC66808 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:125 → 498
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:101 → 121
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:85 → 109
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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