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    Fam229a family with sequence similarity 229, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500554, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam229aprovided by RGD
    Official Full Name
    family with sequence similarity 229, member Aprovided by RGD
    Primary source
    RGD:1564163
    See related
    EnsemblRapid:ENSRNOG00000042787 AllianceGenome:RGD:1564163
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564163
    Summary
    Orthologous to human FAM229A (family with sequence similarity 229 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 249.7) and Spleen (RPKM 5.6) See more
    Orthologs
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    Genomic context

    See Fam229a in Genome Data Viewer
    Location:
    5q36
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (147114054..147115043)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141829716..141830705)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147692391..147693380)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 8b Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 2 Neighboring gene BSD domain containing 1 Neighboring gene small nuclear ribonucleoprotein G pseudogene Neighboring gene testis-specific serine kinase 3 Neighboring gene MARCKS-like 1 Neighboring gene histone deacetylase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109266.1NP_001102736.1  protein FAM229A

      See identical proteins and their annotated locations for NP_001102736.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473968
      UniProtKB/TrEMBL
      A6ISJ1, D4A5X2
      Related
      ENSRNOP00000059148.1, ENSRNOT00000064855.3
      Conserved Domains (1) summary
      pfam14982
      Location:60123
      UPF0731; UPF0731 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      147114054..147115043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)