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    LOC102547047 uncharacterized LOC102547047 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102547047, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC102547047provided by RGD
    Full Name
    uncharacterized LOC102547047provided by RGD
    Primary source
    RGD:7503123
    See related
    AllianceGenome:RGD:7503123
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 10.1), Adrenal (RPKM 2.7) and 5 other tissues See more
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    Genomic context

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    See LOC102547047 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (81225597..81249166, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (80695067..80762037, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (83584629..83636404, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene prohibitin 1 Neighboring gene uncharacterized LOC120095179 Neighboring gene zinc finger protein 652 Neighboring gene phosphoethanolamine/phosphocholine phosphatase 1 Neighboring gene ABI family, member 3 Neighboring gene G protein subunit gamma transducin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC102547047

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      81225597..81249166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270141.1 → XP_063126211.1  uncharacterized protein LOC102547047 isoform X1

    2. XM_039087394.2 → XP_038943322.1  uncharacterized protein LOC102547047 isoform X3

    3. XM_006247223.5 → XP_006247285.1  uncharacterized protein LOC102547047 isoform X3

      See identical proteins and their annotated locations for XP_006247285.1

    4. XM_039087393.2 → XP_038943321.1  uncharacterized protein LOC102547047 isoform X3

    5. XM_006247229.3 → XP_006247291.1  uncharacterized protein LOC102547047 isoform X4

      See identical proteins and their annotated locations for XP_006247291.1

    6. XM_039087390.2 → XP_038943318.1  uncharacterized protein LOC102547047 isoform X3

    7. XM_039087392.2 → XP_038943320.1  uncharacterized protein LOC102547047 isoform X3

    8. XM_006247216.3 → XP_006247278.1  uncharacterized protein LOC102547047 isoform X2

      See identical proteins and their annotated locations for XP_006247278.1

    9. XM_006247221.3 → XP_006247283.1  uncharacterized protein LOC102547047 isoform X3

      See identical proteins and their annotated locations for XP_006247283.1

    10. XM_008768190.3 → XP_008766412.1  uncharacterized protein LOC102547047 isoform X3

      See identical proteins and their annotated locations for XP_008766412.1

    11. XM_006247219.3 → XP_006247281.1  uncharacterized protein LOC102547047 isoform X3

      See identical proteins and their annotated locations for XP_006247281.1

    12. XM_008768191.3 → XP_008766413.1  uncharacterized protein LOC102547047 isoform X3

      See identical proteins and their annotated locations for XP_008766413.1

    RNA

    1. XR_005490436.2 RNA Sequence

    2. XR_005490435.2 RNA Sequence

    3. XR_010055751.1 RNA Sequence

    4. XR_010055750.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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