lrpprc leucine-rich pentatricopeptide repeat containing [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lrpprcprovided by ZNC
Official Full Name: leucine-rich pentatricopeptide repeat containingprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7887
See related: Ensembl:ENSDARG00000043970 AllianceGenome:ZFIN:ZDB-GENE-030131-7887
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc13c04; im:7150924; im:7151572; wu:fc13c04; wu:fj38h02
Summary: Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mitochondrial translation. Predicted to be active in mitochondrion and nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in French Canadian Leigh disease and Leigh disease. Orthologous to human LRPPRC (leucine rich pentatricopeptide repeat containing). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 38

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (10799449..10922821)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (10666974..10790346)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G41765 (e-PCR)
- UniSTS:62264

fc13c04.x1 (e-PCR)
- UniSTS:187751

fj15h11.x1 (e-PCR)
- UniSTS:198627

fb83g08.x1 (e-PCR)
- UniSTS:203500

General protein information

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Preferred Names: leucine-rich PPR motif-containing protein, mitochondrial

Names: leucine-rich PPR-motif containing

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001142592.1 → NP_001136064.1 leucine-rich PPR motif-containing protein, mitochondrial

Status: VALIDATED

Source sequence(s)

AL928999, BC139519, CR788247, CT706605, CT732977

UniProtKB/TrEMBL

A0A8N1TT16

Related

ENSDARP00000111776.3, ENSDART00000126427.4

Conserved Domains (4) summary

sd00004
Location:218 → 245

PPR; PPR repeat [structural motif]

pfam01535
Location:778 → 806

PPR; PPR repeat

pfam13041
Location:214 → 263

PPR_2; PPR repeat family

cl03252
Location:211 → 243

PPR; PPR repeat