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    ymfA putative inner membrane protein YmfA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945684, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ymfA
    Official Full Name
    putative inner membrane protein YmfA
    Primary source
    ECOCYC:G6579
    Locus tag
    b1122
    See related
    ASAP:ABE-0003786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1108
    Summary
    YmfA is an inner membrane protein with two predicted transmembrane domains. [More information is available at EcoCyc: G6579].
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    Genomic context

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    Sequence:
    NC_000913.3 (1181264..1181725, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene N-acetyl-D-glucosamine kinase Neighboring gene CobB-S;protein-lysine deacetylase/desuccinylase/lipoamidase Neighboring gene putative inner membrane protein YcfZ Neighboring gene spermidine preferential ABC transporter periplasmic binding protein Neighboring gene spermidine preferential ABC transporter membrane subunit PotC Neighboring gene spermidine preferential ABC transporter membrane subunit PotB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    2. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative inner membrane protein YmfA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1181264..1181725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415640.2 putative inner membrane protein YmfA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415640.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8QTE3
      Conserved Domains (1) summary
      pfam12158
      Location:7 → 140
      DUF3592; Protein of unknown function (DUF3592)
    Nucleotide Protein
    Heading Accession and Version

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