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    ygbI DNA-binding transcriptional repressor YgbI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947204, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygbI
    Official Full Name
    DNA-binding transcriptional repressor YgbI
    Primary source
    ECOCYC:G7416
    Locus tag
    b2735
    See related
    ASAP:ABE-0008982
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2730
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    Genomic context

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    Sequence:
    NC_000913.3 (2860467..2861234, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA mismatch repair protein MutS Neighboring gene phosphoprotein phosphatase 2 Neighboring gene putative L-threonate dehydrogenase Neighboring gene putative 3-oxo-tetronate kinase YgbK Neighboring gene putative 3-oxo-tetronate 4-phosphate decarboxylase YgbL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ligand-activated transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor YgbI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2860467..2861234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417215.2 DNA-binding transcriptional repressor YgbI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417215.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3K0WBR0
      Conserved Domains (1) summary
      COG1349
      Location:1 → 253
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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