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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001164314.2 → NP_001157786.1 tryptophan--tRNA ligase, cytoplasmic isoform 2
See identical proteins and their annotated locations for NP_001157786.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, 3' UTR, and coding region, compared to variant 1. The encoded isoform (2) has a shorter C-terminus compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
- Source sequence(s)
-
AC122811, AC152061
- Consensus CDS
-
CCDS49171.1
- UniProtKB/TrEMBL
- Q3U6U7, Q3UDG2
- Related
- ENSMUSP00000105474.4, ENSMUST00000109848.10
- Conserved Domains (3) summary
-
- PLN02486
Location:89 → 470
- PLN02486; aminoacyl-tRNA ligase
- TIGR00233
Location:158 → 467
- trpS; tryptophanyl-tRNA synthetase
- pfam00458
Location:16 → 68
- WHEP-TRS; WHEP-TRS domain
-
NM_001164488.2 → NP_001157960.1 tryptophan--tRNA ligase, cytoplasmic isoform 2
See identical proteins and their annotated locations for NP_001157960.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and 3' coding region, compared to variant 1. The encoded isoform (2) has a shorter C-terminus compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
- Source sequence(s)
-
AC122811, AC152061
- Consensus CDS
-
CCDS49171.1
- UniProtKB/TrEMBL
- Q3U6U7, Q3UDG2
- Related
- ENSMUSP00000125320.2, ENSMUST00000161410.8
- Conserved Domains (3) summary
-
- PLN02486
Location:89 → 470
- PLN02486; aminoacyl-tRNA ligase
- TIGR00233
Location:158 → 467
- trpS; tryptophanyl-tRNA synthetase
- pfam00458
Location:16 → 68
- WHEP-TRS; WHEP-TRS domain
-
NM_001411907.1 → NP_001398836.1 tryptophan--tRNA ligase, cytoplasmic isoform 1
Status: VALIDATED
- Description
- Transcript Variant: Variants 1, 4, 5, and 6 encode the same isoform (1).
- Source sequence(s)
-
AC122811, AC152061
- UniProtKB/Swiss-Prot
- P32921, Q80ZY4, Q99J58, Q9DC65
- UniProtKB/TrEMBL
-
Q4FJZ4
-
NM_001411908.1 → NP_001398837.1 tryptophan--tRNA ligase, cytoplasmic isoform 1
Status: VALIDATED
- Description
- Transcript Variant: Variants 1, 4, 5, and 6 encode the same isoform (1).
- Source sequence(s)
-
AC122811, AC152061
- UniProtKB/Swiss-Prot
- P32921, Q80ZY4, Q99J58, Q9DC65
- UniProtKB/TrEMBL
-
Q4FJZ4
-
NM_001411909.1 → NP_001398838.1 tryptophan--tRNA ligase, cytoplasmic isoform 1
Status: VALIDATED
- Description
- Transcript Variant: Variants 1, 4, 5, and 6 encode the same isoform (1).
- Source sequence(s)
-
AC122811, AC152061
- UniProtKB/Swiss-Prot
- P32921, Q80ZY4, Q99J58, Q9DC65
- UniProtKB/TrEMBL
-
Q4FJZ4
-
NM_001411910.1 → NP_001398839.1 tryptophan--tRNA ligase, cytoplasmic isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC122811, AC152061
- UniProtKB/TrEMBL
-
Q4FJZ4
-
NM_011710.4 → NP_035840.3 tryptophan--tRNA ligase, cytoplasmic isoform 1
See identical proteins and their annotated locations for NP_035840.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 4, 5, and 6 encode the same isoform.
- Source sequence(s)
-
AC122811, AC152061
- Consensus CDS
-
CCDS26166.1
- UniProtKB/Swiss-Prot
- P32921, Q80ZY4, Q99J58, Q9DC65
- UniProtKB/TrEMBL
-
Q4FJZ4
- Related
- ENSMUSP00000124625.2, ENSMUST00000161154.2
- Conserved Domains (2) summary
-
- PLN02486
Location:89 → 470
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:16 → 65
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
RNA
-
NR_177976.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC122811, AC152061
-
NR_177977.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC122811, AC152061
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000078.7 Reference GRCm39 C57BL/6J
- Range
-
108825956..108860095 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006515819.3 → XP_006515882.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
See identical proteins and their annotated locations for XP_006515882.1
- UniProtKB/Swiss-Prot
- P32921, Q80ZY4, Q99J58, Q9DC65
- UniProtKB/TrEMBL
-
Q4FJZ4
- Conserved Domains (2) summary
-
- PLN02486
Location:89 → 470
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:16 → 65
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...