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    BC048679 cDNA sequence BC048679 [ Mus musculus (house mouse) ]

    Gene ID: 210321, updated on 27-Nov-2024

    Summary

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    Official Symbol
    BC048679provided by MGI
    Official Full Name
    cDNA sequence BC048679provided by MGI
    Primary source
    MGI:MGI:3510776
    See related
    Ensembl:ENSMUSG00000061877 AllianceGenome:MGI:3510776
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward genital fat pad adult (RPKM 333.6) See more
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    Genomic context

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    See BC048679 in Genome Data Viewer
    Location:
    7 D3; 7 45.71 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81144022..81148078, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81494274..81498330, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 1 Neighboring gene ribosomal protein L7A, pseudogene 9 Neighboring gene adaptor-related protein complex 3, beta 2 subunit Neighboring gene STARR-seq mESC enhancer starr_19364 Neighboring gene predicted gene, 45991 Neighboring gene RIKEN cDNA 2900076A07 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:88668387-88668540 Neighboring gene microRNA 1839

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. Penttinen J, et al. Mol Endocrinol, 2003 Nov. PMID 12920233
    2. Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Mu X, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812828, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC210321
    Names
    epididymal protein Av381126

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193274.1 → NP_001180203.1  uncharacterized protein LOC210321 isoform 1

      See identical proteins and their annotated locations for NP_001180203.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BB073717, BC048679, BG803866
      Consensus CDS
      CCDS57558.1
      UniProtKB/TrEMBL
      D3YXE9
      Related
      ENSMUSP00000120616.2, ENSMUST00000144156.2
      Conserved Domains (2) summary
      COG0791
      Location:43 → 77
      Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
      cl21534
      Location:43 → 90
      NLPC_P60; NlpC/P60 family

    2. NM_001358040.1 → NP_001344969.1  uncharacterized protein LOC210321 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal in-frame exon, compared to variant 1. The resulting isoform (3) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      BB073717, BC145514, BG803866
      Consensus CDS
      CCDS90262.1
      UniProtKB/TrEMBL
      A0A140LJ97
      Related
      ENSMUSP00000147131.2, ENSMUST00000207871.2
      Conserved Domains (1) summary
      cl21534
      Location:37 → 84
      NLPC_P60; NlpC/P60 family

    3. NM_183143.3 → NP_898966.1  uncharacterized protein LOC210321 isoform 2

      See identical proteins and their annotated locations for NP_898966.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AC167121
      Consensus CDS
      CCDS40008.1
      UniProtKB/TrEMBL
      Q6XL63
      Related
      ENSMUSP00000073114.6, ENSMUST00000073406.12
      Conserved Domains (2) summary
      COG0791
      Location:43 → 77
      Spr; Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]
      cl21534
      Location:43 → 77
      NLPC_P60; NlpC/P60 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      81144022..81148078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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