U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dpr13 defective proboscis extension response 13 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3885598, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dpr13provided by FlyBase
    Official Full Name
    defective proboscis extension response 13provided by FlyBase
    Primary source
    FLYBASE:FBgn0034286
    Locus tag
    Dmel_CG33996
    See related
    AllianceGenome:FB:FBgn0034286
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG12557; CG14493; CG33996; CT34204; Dmel\CG33996; Dm_2R:58906; Dpr-13; Dpr13
    Summary
    Involved in synapse organization. Predicted to be located in plasma membrane. Predicted to be active in neuron projection membrane. Is expressed in dorsal sensory complex proper primordium; embryonic brain; larval ventral nerve cord; and ventral sensory complex primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See dpr13 in Genome Data Viewer
    Location:
    55A3-55A3; 2-84 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (17975122..18007902, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (13862627..13895407, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44418 Neighboring gene Protein phosphatase Y at 55A Neighboring gene long non-coding RNA:CR44419 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila. Barish S, et al. PLoS Genet, 2018 Aug. PMID 30102700, Free PMC Article
    2. Defective proboscis extension response (DPR), a member of the Ig superfamily required for the gustatory response to salt. Nakamura M, et al. J Neurosci, 2002 May 1. PMID 11978823, Free PMC Article
    3. Neural immunoglobulin superfamily interaction networks. Zinn K, et al. Curr Opin Neurobiol, 2017 Aug. PMID 28558267, Free PMC Article
    4. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. Pool JE, et al. PLoS Genet, 2012. PMID 23284287, Free PMC Article
    5. Systematic expression profiling of Dpr and DIP genes reveals cell surface codes in Drosophila larval motor and sensory neurons. Wang Y, et al. Development, 2022 May 15. PMID 35502740, Free PMC Article

    See all (42) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in synapse organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in synapse organization IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in neuron projection membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    defective proboscis extension response 13
    Names
    CG33996-PB
    CG33996-PC
    dpr13-PB
    dpr13-PC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      17975122..18007902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001038867.4 → NP_001033956.2  defective proboscis extension response 13, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001033956.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZB15, C5WLT5, C6TP32
      Conserved Domains (3) summary
      smart00408
      Location:292 → 361
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:285 → 362
      IG_like; Immunoglobulin like
      pfam07686
      Location:180 → 276
      V-set; Immunoglobulin V-set domain

    2. NM_001299626.1 → NP_001286555.1  defective proboscis extension response 13, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LFL9, C5WLT5
      Conserved Domains (3) summary
      smart00408
      Location:291 → 360
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:284 → 361
      IG_like; Immunoglobulin like
      pfam07686
      Location:180 → 276
      V-set; Immunoglobulin V-set domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LFL9 A0A0B4LFL9
    A1ZB15 A1ZB15

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools