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    trus toys are us [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41540, updated on 9-Dec-2024

    Summary

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    Official Symbol
    trusprovided by FlyBase
    Official Full Name
    toys are usprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038055
    Locus tag
    Dmel_CG5333
    See related
    AllianceGenome:FB:FBgn0038055
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG5333; Dmel\CG5333
    Summary
    Predicted to be involved in apoptotic process. Predicted to be located in cytoplasm. Orthologous to human PDCD2L (programmed cell death 2 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See trus in Genome Data Viewer
    Location:
    87B11-87B11; 3-52 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12456573..12458444)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8282295..8284166)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene versager Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNA polymerase III subunit C Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Programmed Cell Death 2-Like (Pdcd2l) Is Required for Mouse Embryonic Development. Houston BJ, et al. G3 (Bethesda), 2020 Dec 3. PMID 33055224, Free PMC Article
    2. Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes. Kohn MH, et al. Mol Biol Evol, 2004 Feb. PMID 14660692
    3. Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. Dottorini T, et al. BMC Bioinformatics, 2011 Jan 26. PMID 21269436, Free PMC Article
    4. Functional genomic analysis of the periodic transcriptome in the developing Drosophila wing. Liang L, et al. Dev Cell, 2014 Apr 14. PMID 24684830
    5. Identification of pathways regulating cell size and cell-cycle progression by RNAi. Björklund M, et al. Nature, 2006 Feb 23. PMID 16496002

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    toys are us
    Names
    CG5333-PA
    trus-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      12456573..12458444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141948.3 → NP_650205.1  toys are us [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650205.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q29R43, Q9VG62
      Related
      FBpp0082103
      Conserved Domains (1) summary
      pfam04194
      Location:371 → 482
      PDCD2_C; Programmed cell death protein 2, C-terminal putative domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VG62 Q9VG62

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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