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    SNR14 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164888, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR14
    Primary source
    SGD:S000006499
    Locus tag
    YNCE0011C
    See related
    AllianceGenome:SGD:S000006499
    Gene type
    ncRNA
    RNA name
    snRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Part of U4/U6 x U5 tri-snRNP complex and spliceosomal complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR14 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    1
    Sequence:
    Chromosome: V; NC_001137.3 (167427..167586, complement)

    Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene Pac2p Neighboring gene translation machinery-associated protein 20 Neighboring gene GTP-Rho binding exocyst subunit SEC3 Neighboring gene Ran GTPase-binding protein NTF2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001137.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vitro reconstitution of yeast splicing with U4 snRNA reveals multiple roles for the 3' stem-loop. Hayduk AJ, et al. RNA, 2012 May. PMID 22411955, Free PMC Article
    2. Mutational analysis of Saccharomyces cerevisiae U4 small nuclear RNA identifies functionally important domains. Hu J, et al. Mol Cell Biol, 1995 Mar. PMID 7862121, Free PMC Article
    3. Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model. Kuehner JN, et al. J Biol Chem, 2006 May 19. PMID 16571719
    4. Identification of a yeast snRNP protein and detection of snRNP-snRNP interactions. Lossky M, et al. Cell, 1987 Dec 24. PMID 2961458
    5. A multi-step model for facilitated unwinding of the yeast U4/U6 RNA duplex. Rodgers ML, et al. Nucleic Acids Res, 2016 Dec 15. PMID 27484481, Free PMC Article

    See all (48) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • U4 spliceosomal RNA (U4 snRNA); interacts with U6

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001137.3 Reference assembly

      Range
      167427..167586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132167.1 RNA Sequence

      Status: REVIEWED

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