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    osta-3 Organic solute transporter alpha-like protein 3 [ Caenorhabditis elegans ]

    Gene ID: 175140, updated on 9-Dec-2024

    Summary

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    Official Symbol
    osta-3
    Official Full Name
    Organic solute transporter alpha-like protein 3
    Primary source
    WormBase:WBGene00012182
    Locus tag
    CELE_W01D2.5
    See related
    AllianceGenome:WB:WBGene00012182
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in neurons. Human ortholog(s) of this gene implicated in progressive familial intrahepatic cholestasis. Orthologous to human SLC51A (solute carrier family 51 member A). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See osta-3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (14813026..14814889)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class T Neighboring gene 9.7 kDa protein Neighboring gene Ribosomal protein L37 Neighboring gene Nuclear hormone receptor family member nhr-61;Nuclear receptor Neighboring gene Cadherin domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The C. elegans regulatory factor X (RFX) DAF-19M module: A shift from general ciliogenesis to cell-specific ciliary and behavioral specialization. Ahn S, et al. Cell Rep, 2022 Apr 12. PMID 35417689
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Organic solute transporter alpha-like protein 3
    NP_001293580.1
    • Confirmed by transcript evidence
    NP_497071.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      14813026..14814889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064670.6 → NP_497071.1  Organic solute transporter alpha-like protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497071.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XU63
      Conserved Domains (1) summary
      pfam03619
      Location:50 → 311
      Solute_trans_a; Organic solute transporter Ostalpha

    2. NM_001306651.3 → NP_001293580.1  Organic solute transporter alpha-like protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293580.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PEW3
      Conserved Domains (1) summary
      pfam03619
      Location:1 → 209
      Solute_trans_a; Organic solute transporter Ostalpha
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XU63.1

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