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    idpp-1 SXP/RAL-2 family protein Ani s 5-like cation-binding domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175228, updated on 9-Dec-2024

    Summary

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    Official Symbol
    idpp-1
    Official Full Name
    SXP/RAL-2 family protein Ani s 5-like cation-binding domain-containing protein
    Primary source
    WormBase:WBGene00020550
    Locus tag
    CELE_T17H7.1
    See related
    AllianceGenome:WB:WBGene00020550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in OLLL; OLLR; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See idpp-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (740682..742941)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ETS domain-containing protein Neighboring gene ncRNA Neighboring gene VPSAGDMMVRF-amide Neighboring gene Protein pat-12 Neighboring gene ncRNA Neighboring gene Mucin-5AC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability. Cordeiro Rodrigues RJ, et al. Genes Dev, 2019 Jul 1. PMID 31147388, Free PMC Article
    2. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    SXP/RAL-2 family protein Ani s 5-like cation-binding domain-containing protein
    NP_497250.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      740682..742941
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064849.7 → NP_497250.1  SXP/RAL-2 family protein Ani s 5-like cation-binding domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497250.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22537
      Conserved Domains (1) summary
      pfam02520
      Location:57 → 158
      DUF148; Domain of unknown function DUF148
    Nucleotide Protein
    Heading Accession and Version

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