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    F54F12.2 DUF1980 domain-containing protein;PGG domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186259, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F54F12.2
    Official Full Name
    DUF1980 domain-containing protein;PGG domain-containing protein
    Primary source
    WormBase:WBGene00010073
    Locus tag
    CELE_F54F12.2
    See related
    AllianceGenome:WB:WBGene00010073
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F54F12.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (13040039..13049558)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene protein of unknown function WSN domain-containing protein Neighboring gene ncRNA Neighboring gene WSN domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1980 domain-containing protein;PGG domain-containing protein
    NP_001122700.1
    • Confirmed by transcript evidence
    NP_001122701.1
    • Partially confirmed by transcript evidence
    NP_001255187.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      13040039..13049558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129228.4 → NP_001122700.1  PGG domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122700.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A7LPI9
      Conserved Domains (1) summary
      COG1480
      Location:103 → 252
      YqfF; Membrane-associated HD superfamily phosphohydrolase [General function prediction only]

    2. NM_001268258.3 → NP_001255187.1  PGG domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255187.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F5GUF8
      Conserved Domains (1) summary
      COG1480
      Location:78 → 227
      YqfF; Membrane-associated HD superfamily phosphohydrolase [General function prediction only]

    3. NM_001129229.3 → NP_001122701.1  DUF1980 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122701.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A7LPJ0
      Conserved Domains (1) summary
      COG1480
      Location:82 → 231
      YqfF; Membrane-associated HD superfamily phosphohydrolase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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