U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    col-111 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177230, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    col-111
    Official Full Name
    Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00000685
    Locus tag
    CELE_F29B9.9
    See related
    AllianceGenome:WB:WBGene00000685
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See col-111 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (4655791..4657974, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Pheromone-regulated membrane protein 10 Neighboring gene SUMO-conjugating enzyme UBC9 Neighboring gene Thioredoxin domain-containing protein Neighboring gene Bifunctional arginine demethylase and lysyl-hydroxylase psr-1;JmjC domain-containing protein Neighboring gene Mitochondrial Ribosomal Protein, Small Neighboring gene Cytochrome c oxidase polypeptide VIIc

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Age-related behaviors have distinct transcriptional profiles in Caenorhabditis elegans. Golden TR, et al. Aging Cell, 2008 Dec. PMID 18778409, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
    NP_001380137.1
    • Partially confirmed by transcript evidence
    NP_500607.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4655791..4657974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068206.7 → NP_500607.2  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500607.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GYI3
      Conserved Domains (1) summary
      smart01088
      Location:8 → 60
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain

    2. NM_001392302.1 → NP_001380137.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PM21
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools