copg-1 Coatomer subunit gamma;putative coatomer subunit gamma [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: copg-1
Official Full Name: Coatomer subunit gamma;putative coatomer subunit gamma
Primary source: WormBase:WBGene00011775
Locus tag: CELE_T14G10.5
See related: AllianceGenome:WB:WBGene00011775
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to be located in COPI-coated vesicle membrane and Golgi apparatus. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human COPG1 (COPI coat complex subunit gamma 1) and COPG2 (COPI coat complex subunit gamma 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See copg-1 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 7

Sequence:: Chromosome: IV; NC_003282.8 (10151947..10155639)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

T14G10.5 (e-PCR)
- UniSTS:308032

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intra-Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intracellular protein transport	IEA Inferred from Electronic Annotation more info
involved_in organelle transport along microtubule	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein secretion	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein transport	IEA Inferred from Electronic Annotation more info
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPI vesicle coat	IBA Inferred from Biological aspect of Ancestor more info
part_of COPI vesicle coat	IEA Inferred from Electronic Annotation more info
located_in COPI-coated vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
is_active_in Golgi membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
is_active_in endoplasmic reticulum-Golgi intermediate compartment	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of membrane coat	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Coatomer subunit gamma;putative coatomer subunit gamma

NP_001040988.1

Confirmed by transcript evidence

NP_001040989.1

Confirmed by transcript evidence

NP_001255464.1

Confirmed by transcript evidence

NP_001293961.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

10151947..10155639

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001268535.4 → NP_001255464.1 Coatomer subunit gamma [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001255464.1

Status: REVIEWED

UniProtKB/TrEMBL

F5GUA3

Conserved Domains (5) summary

COG5240
Location:14 → 881

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:624 → 767

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam12830
Location:305 → 358

Nipped-B_C; Sister chromatid cohesion C-terminus

pfam16381
Location:769 → 884

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:408 → 433

HEAT; HEAT repeat [structural motif]
NM_001047524.5 → NP_001040989.1 Coatomer subunit gamma [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001040989.1

Status: REVIEWED

UniProtKB/TrEMBL

Q2XN02

Conserved Domains (5) summary

COG5240
Location:14 → 879

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:622 → 765

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam12830
Location:303 → 356

Nipped-B_C; Sister chromatid cohesion C-terminus

pfam16381
Location:767 → 882

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:406 → 431

HEAT; HEAT repeat [structural motif]
NM_001047523.6 → NP_001040988.1 putative coatomer subunit gamma [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001040988.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q22498

Conserved Domains (5) summary

COG5240
Location:1 → 866

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:609 → 752

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam12830
Location:290 → 343

Nipped-B_C; Sister chromatid cohesion C-terminus

pfam16381
Location:754 → 869

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:393 → 418

HEAT; HEAT repeat [structural motif]
NM_001307032.3 → NP_001293961.1 Coatomer subunit gamma [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001293961.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A061ACR1

Conserved Domains (5) summary

COG5240
Location:1 → 868

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:611 → 754

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam12830
Location:292 → 345

Nipped-B_C; Sister chromatid cohesion C-terminus

pfam16381
Location:756 → 871

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:395 → 420

HEAT; HEAT repeat [structural motif]