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    LINC00906 long intergenic non-protein coding RNA 906 [ Homo sapiens (human) ]

    Gene ID: 148145, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00906provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 906provided by HGNC
    Primary source
    HGNC:HGNC:27121
    See related
    Ensembl:ENSG00000267339 AllianceGenome:HGNC:27121
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.9) See more
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    Genomic context

    See LINC00906 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (28965131..28969148)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (31495059..31499076)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (29456038..29460055)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1A member 2 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:29371723-29372474 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:29372475-29373224 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:29373975-29374724 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:29395574-29395771 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29402081-29402580 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29424848-29425348 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:29440411-29440973 Neighboring gene uncharacterized LOC102724958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29474323-29474824 Neighboring gene RNA, 5S ribosomal pseudogene 470 Neighboring gene long intergenic non-protein coding RNA 1532

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027318.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC039341, BX647231, DB513590
      Related
      ENST00000589921.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      28965131..28969148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      31495059..31499076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)