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    TOX-DT TOX divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100505501, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TOX-DTprovided by HGNC
    Official Full Name
    TOX divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55935
    See related
    Ensembl:ENSG00000167912 AllianceGenome:HGNC:55935
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in lymph node (RPKM 3.2), brain (RPKM 2.9) and 19 other tissues See more
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    Genomic context

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    See TOX-DT in Genome Data Viewer
    Location:
    8q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (59119210..59123478)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (59540533..59544801)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (60031769..60036037)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:59684732-59685232 Neighboring gene Sharpr-MPRA regulatory region 1495 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:59754041-59755240 Neighboring gene RNA, U4 small nuclear 50, pseudogene Neighboring gene thymocyte selection associated high mobility group box Neighboring gene VISTA enhancer hs1326 Neighboring gene MPRA-validated peak7040 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:59967891-59968391 Neighboring gene NANOG hESC enhancer GRCh37_chr8:59971345-59971881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27415 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:59993837-59994016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:60021805-60022474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19221 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:60086437-60087028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27416 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19222 Neighboring gene RNA, 5S ribosomal pseudogene 267

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149030.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087698, AC090152
      Related
      ENST00000665670.3

    2. NR_149031.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087698, AC090152

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      59119210..59123478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      59540533..59544801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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