U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ptprdl protein tyrosine phosphatase, receptor type, D like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102554881, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ptprdlprovided by RGD
    Official Full Name
    protein tyrosine phosphatase, receptor type, D likeprovided by RGD
    Primary source
    RGD:7703644
    See related
    AllianceGenome:RGD:7703644
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 25.9) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ptprdl in Genome Data Viewer
    Location:
    5q31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (97414616..97426593)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (92368410..92380389)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (95300590..95437042)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, receptor type, D Neighboring gene uncharacterized LOC120103065 Neighboring gene developmentally regulated GTP binding protein 1, pseudogene 2 Neighboring gene uncharacterized LOC134486944 Neighboring gene zinc finger CCHC-type containing 9, pseudogene 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein Ptprdl

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      97414616..97426593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111479.1 → XP_038967407.1  uncharacterized protein Ptprdl

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials