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    LOC100216763 uncharacterized LOC100216763 [ Zea mays ]

    Gene ID: 100216763, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC100216763
    Gene description
    uncharacterized LOC100216763
    Locus tag
    ZEAMMB73_Zm00001d008430
    See related
    EnsemblRapid:Zm00001eb334410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM5G851914
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    Genomic context

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    See LOC100216763 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (8687651..8690807, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (8610939..8614032, complement)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene RING-box protein 1-like Neighboring gene paired amphipathic helix protein Sin3-like 4 Neighboring gene uncharacterized LOC100277534 Neighboring gene acetyl-CoA acetyltransferase, cytosolic 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Jia J, et al. Plant J, 2006 Dec. PMID 17076806
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100216763

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143163.1 → NP_001136635.1  uncharacterized protein LOC100216763

      See identical proteins and their annotated locations for NP_001136635.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has three introns.
      Source sequence(s)
      BT037308
      UniProtKB/TrEMBL
      A0A3L6DTP0, A0A3L6DW19, B4FI90
      Conserved Domains (1) summary
      cl07053
      Location:23 → 86
      Sin3_corepress; Sin3 family co-repressor

    2. NM_001359495.1 → NP_001346424.1  uncharacterized protein LOC100216763

      Status: VALIDATED

      Description
      Transcript Variant:This variant (2) has four introns.
      Source sequence(s)
      BT036828
      UniProtKB/TrEMBL
      A0A3L6DTP0, A0A3L6DW19, B4FI90
      Related
      Zm00001eb334410_P003, Zm00001eb334410_T003
      Conserved Domains (1) summary
      cl07053
      Location:23 → 86
      Sin3_corepress; Sin3 family co-repressor

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      8687651..8690807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008656244.4 → XP_008654466.1  uncharacterized protein LOC100216763 isoform X1

      See identical proteins and their annotated locations for XP_008654466.1

      UniProtKB/TrEMBL
      A0A804QK01
      Related
      Zm00001eb334410_P001, Zm00001eb334410_T001

    2. XM_008656251.4 → XP_008654473.1  uncharacterized protein LOC100216763 isoform X2

      See identical proteins and their annotated locations for XP_008654473.1

      UniProtKB/TrEMBL
      A0A3L6DTP0, A0A3L6DW19, B4FI90
      Related
      Zm00001eb334410_P004, Zm00001eb334410_T004
      Conserved Domains (1) summary
      cl07053
      Location:23 → 86
      Sin3_corepress; Sin3 family co-repressor

    3. XM_008656252.4 → XP_008654474.1  uncharacterized protein LOC100216763 isoform X2

      See identical proteins and their annotated locations for XP_008654474.1

      UniProtKB/TrEMBL
      A0A3L6DTP0, A0A3L6DW19, B4FI90
      Conserved Domains (1) summary
      cl07053
      Location:23 → 86
      Sin3_corepress; Sin3 family co-repressor

    4. XM_035961314.1 → XP_035817207.1  uncharacterized protein LOC100216763 isoform X1

      UniProtKB/TrEMBL
      A0A804QK01

    5. XM_020541926.2 → XP_020397515.1  uncharacterized protein LOC100216763 isoform X2

      UniProtKB/TrEMBL
      A0A3L6DTP0, A0A3L6DW19, B4FI90
      Related
      Zm00001eb334410_P002, Zm00001eb334410_T002
      Conserved Domains (1) summary
      cl07053
      Location:23 → 86
      Sin3_corepress; Sin3 family co-repressor

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001149702.1: Suppressed sequence

      Description
      NM_001149702.1: This RefSeq was suppressed because the instantiating accession is a chimera.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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