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    LOC100284619 uncharacterized LOC100284619 [ Zea mays ]

    Gene ID: 100284619, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC100284619
    Gene description
    uncharacterized LOC100284619
    Locus tag
    ZEAMMB73_Zm00001d053807
    See related
    EnsemblRapid:Zm00001eb207370
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pco070684; GRMZM2G041159
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    Genomic context

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    See LOC100284619 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (244789147..244793172)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (241453002..241457027)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene FK506 binding protein Neighboring gene serine/threonine-protein phosphatase BSL2 homolog Neighboring gene uncharacterized LOC100193703 Neighboring gene uncharacterized LOC109945651

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylbilane synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-pyrromethane cofactor linkage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Porphobilinogen deaminase, chloroplastic; uncharacterized protein LOC100284619
    Names
    Porphobilinogen deaminase chloroplastic
    pco070684(361)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372016.1 → NP_001358945.1  Porphobilinogen deaminase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      DR816223, DR816224, DV942425, EE021810
      UniProtKB/TrEMBL
      A0A804P454, B6TVP0
      Related
      Zm00001eb207370_P002, Zm00001eb207370_T002
      Conserved Domains (1) summary
      PLN02691
      Location:6 → 355
      PLN02691; porphobilinogen deaminase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      244789147..244793172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679116.3 → XP_008677338.1  uncharacterized protein LOC100284619 isoform X1

      UniProtKB/TrEMBL
      A0A804PF87
      Conserved Domains (2) summary
      PRK00072
      Location:52 → 342
      hemC; porphobilinogen deaminase; Reviewed
      cd13648
      Location:52 → 322
      PBP2_PBGD_1; An uncharacterized subgroup of the PBGD family; the type 2 periplasmic binding protein fold

    2. XM_008679117.4 → XP_008677339.1  uncharacterized protein LOC100284619 isoform X2

      UniProtKB/TrEMBL
      A0A1D6H1H6
      Conserved Domains (2) summary
      PRK00072
      Location:19 → 309
      hemC; porphobilinogen deaminase; Reviewed
      cd13648
      Location:19 → 289
      PBP2_PBGD_1; An uncharacterized subgroup of the PBGD family; the type 2 periplasmic binding protein fold

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001157514.1: Suppressed sequence

      Description
      NM_001157514.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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