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    LOC542292 male-gametophyte specific 1 [ Zea mays ]

    Gene ID: 542292, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542292
    Gene description
    male-gametophyte specific 1
    Locus tag
    ZEAMMB73_Zm00001d025287
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    mgs1; GRMZM2G317406
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    Genomic context

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    See LOC542292 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (114251648..114252686, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (112727181..112728219, complement)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109943095 Neighboring gene iron-sulfur protein 1 Neighboring gene enolase 1-like Neighboring gene uncharacterized LOC103641596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a pollen-specific cDNA clone from Zea mays and its expression. Hanson DD, et al. Plant Cell, 1989 Feb. PMID 2535540, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00215_Zea_mays_ssp._parviglumis_Benz_967 (e-PCR)

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pollen-specific protein C13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111881.2 → NP_001105351.1  pollen-specific protein C13 precursor

      See identical proteins and their annotated locations for NP_001105351.1

      Status: VALIDATED

      Source sequence(s)
      BQ528447, CABHLF010000007, S44171
      UniProtKB/Swiss-Prot
      P33050
      UniProtKB/TrEMBL
      A0A1Q0XU01, A0A3L6GCX2
      Conserved Domains (1) summary
      pfam01190
      Location:37 → 115
      Pollen_Ole_e_I; Pollen proteins Ole e I like

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      114251648..114252686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P33050.1 GenPept UniProtKB/Swiss-Prot:P33050

    Gene LinkOut

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