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    LOC100381502 histone deacetylase complex subunit SAP18 [ Zea mays ]

    Gene ID: 100381502, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC100381502
    Gene description
    histone deacetylase complex subunit SAP18
    Locus tag
    ZEAMMB73_Zm00001d053919
    See related
    EnsemblRapid:Zm00001eb208420
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    IDP688; GRMZM2G060669
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    Genomic context

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    See LOC100381502 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (246963118..246967284, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (243647692..243651837, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene RAD1 DNA repair protein homolog Neighboring gene terpene synthase 2, chloroplastic-like Neighboring gene uncharacterized LOC100283844 Neighboring gene uncharacterized LOC100281725

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase complex subunit SAP18
    Names
    CL5575_3
    CL5575_3(362)
    CL5575_3a
    IDP2143
    IDP759

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001174333.3 → NP_001167804.2  histone deacetylase complex subunit SAP18

      Status: VALIDATED

      Source sequence(s)
      BT061423, DV491052, EU965204
      UniProtKB/TrEMBL
      A0A3L6F141, A0A3L6F509, A0A8J8XKM2, A0A979HLI5, B6SJC7, B6TJN9
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 151
      SAP18; Sin3 associated polypeptide p18 (SAP18)

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      246963118..246967284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679263.4 → XP_008677485.1  histone deacetylase complex subunit SAP18 isoform X2

      See identical proteins and their annotated locations for XP_008677485.1

      UniProtKB/TrEMBL
      A0A3L6F141, A0A3L6F509, A0A8J8XKM2, A0A979HLI5, B6SJC7, B6TJN9
      Related
      Zm00001eb208420_P001, Zm00001eb208420_T001
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 151
      SAP18; Sin3 associated polypeptide p18 (SAP18)

    2. XM_035967007.1 → XP_035822900.1  histone deacetylase complex subunit SAP18 isoform X1

      UniProtKB/TrEMBL
      A0A1D6QTH3, A0A804P4R7
      Related
      Zm00001eb208420_P003, Zm00001eb208420_T003
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 143
      SAP18; Sin3 associated polypeptide p18 (SAP18)
    Nucleotide Protein
    Heading Accession and Version

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